PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22696.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 265aa    MW: 29191.4 Da    PI: 10.0898
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22696.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.69.3e-25116163249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                              ri+n + rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye 
  mrna22696.1-v1.0-hybrid 116 RIDNCTSRQVTFSKRRKGLIKKAKELAILCDAEVGLLIFSSTGKLYEC 163
                              8*********************************************95 PP
2K-box57.46.4e-201652293498
                    K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                              ++R+++Ge+L  L+lkeL+ Le+qLe sl+ iR kK+++l+++ie+l +k + ++++n +L kk+
  mrna22696.1-v1.0-hybrid 165 SNRQFMGEQLCGLTLKELKGLENQLEMSLQGIRLKKEKMLTDEIEDLNEKGNFIHQQNLELYKKV 229
                              57***********************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.787107167IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-36107166IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-26107167IPR002100Transcription factor, MADS-box
CDDcd002651.75E-33108166No hitNo description
PRINTSPR004044.8E-26109129IPR002100Transcription factor, MADS-box
PfamPF003196.2E-23116162IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-26129144IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.319143235IPR002487Transcription factor, K-box
PRINTSPR004044.8E-26144165IPR002100Transcription factor, MADS-box
PfamPF014861.3E-17164229IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSALFYGADF RPFATIRRRQ GRASTPADSS SFPDHFPSPV SPPNSSFPAR LTLFEVLGDL  60
AGKLDFDGLA GDGKWSGKLL ESAGVEARPR AAPYGGERTK IRTARDMGRG KIVIRRIDNC  120
TSRQVTFSKR RKGLIKKAKE LAILCDAEVG LLIFSSTGKL YECASNRQFM GEQLCGLTLK  180
ELKGLENQLE MSLQGIRLKK EKMLTDEIED LNEKGNFIHQ QNLELYKKVF GTSSLNSENR  240
SGCIPFGMST NAQMRSHISP SAFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16107165159MEF2C
5f28_B8e-16107165159MEF2C
5f28_C8e-16107165159MEF2C
5f28_D8e-16107165159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22696.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288552.11e-102PREDICTED: agamous-like MADS-box protein AGL21
SwissprotQ9SZJ63e-51AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A314ZDD21e-71A0A314ZDD2_PRUYE; MADS-box transcription factor 23
STRINGXP_004288552.11e-102(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-53AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]