PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22490.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 317aa    MW: 33526.2 Da    PI: 9.6069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22490.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.3e-06284309630
                              HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                              +++Er RR ri  ++ +L++l+P+ +
  mrna22490.1-v1.0-hybrid 284 SIAERERRTRISGKLKKLQDLVPNmD 309
                              689********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.604278316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-5281313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-4282312No hitNo description
Gene3DG3DSA:4.10.280.104.8E-5283313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYPSSSSSSS QNPMGPSPTG LTRYGSAPGS LITSAVDSVI AEREFSSLRP HPPSSFVGRY  60
FPGGDGDSSS LTSSESTFKI NGKETATKKP LVRSYGLGEM AAAIGSSSST SCSSSALVRQ  120
RSSPAGFLSH LTDNNGGFSV TRGTGSYSSQ GGPNGGHGVT RLKSQLSFTR QDSLSQISEV  180
SENAGEGVSS NSGHHSSMHS YPATSFGMES WDNTNSIVFS APPSKRAKNM DGDIFNCLNT  240
LESQFSLPQT TLEMATVEKL LHIPEDSVPC KIRAKRGCAT HPRSIAERER RTRISGKLKK  300
LQDLVPNMDK VKTTNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22490.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296710.10.0PREDICTED: transcription factor bHLH128 isoform X1
SwissprotQ8H1021e-77BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A498K4W71e-167A0A498K4W7_MALDO; Uncharacterized protein
STRINGXP_004296710.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]