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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
mrna22412.1-v1.0-hybrid |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
C3H |
Protein Properties |
Length: 285aa MW: 31750.6 Da PI: 7.7877 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
mrna22412.1-v1.0-hybrid | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 46.2 | 7.5e-15 | 215 | 239 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
ktelC+ ++++G C+yGd+C+FaHg
mrna22412.1-v1.0-hybrid 215 KTELCNKWQESGACPYGDNCQFAHG 239
8***********************9 PP
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2 | zf-CCCH | 25.7 | 1.9e-08 | 252 | 277 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt +Cr + +GtC+yG rC+F H+
mrna22412.1-v1.0-hybrid 252 YKTQICRMVLTGGTCPYGHRCHFRHS 277
9**********************998 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-18 | 209 | 246 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-11 | 211 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-8 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.798 | 213 | 241 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-12 | 215 | 239 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-13 | 247 | 280 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-9 | 247 | 282 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 251 | 278 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 251 | 279 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 252 | 277 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 285 aa
Download sequence Send
to blast |
METNSTSTPS SNSTSSDFAS SMYSCSIFPP KFTLPNSLSL TPSTLSDEDG DHRHEDCNTM 60 HRLGQAQLVL ECEELRDHLR KLNNEADSLR RENAVLRSAN TGLVKLLKNL FNASSYVNHP 120 FMADELKPLG FGVFSPRDGD EASDISPTSV IMEQKRFNAD RFSLPKSISV LSSSSGYNNQ 180 PPLHEGLARV ADQEGASGAM QVKKAKAWYN QGMVKTELCN KWQESGACPY GDNCQFAHGV 240 RELRPVMRHP RYKTQICRMV LTGGTCPYGH RCHFRHSLND HQHR*
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