PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna22042.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 324aa MW: 36417.3 Da PI: 8.824

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna22042.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	164	183	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ mrna22042.1-v1.0-hybrid 164 FACSICSKTFNRYNNMQMHM 183 78*****************9 PP
2	zf-C2H2	16	3.5e-05	248	270	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ mrna22042.1-v1.0-hybrid 248 FMCRKCGKTFAVKGDWRTHEKNC 270 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.35E-5	156	187	No hit	No description
SMART	SM00355	0.17	164	186	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-5	164	183	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.3E-4	164	183	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.45	164	191	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	166	186	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	211	243	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.43E-6	234	268	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.5E-6	244	268	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	35	248	268	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.704	248	268	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGLWNNQHQQ VEDYRNLCFQ AAPPFIEWLK PSASSSLSSS LSSSSLTSFC SLEDQNSSSL 60 QCLPLLSRFI DTKPVKREDI GVRREGSGVK EEQIENVTVA LHIGLPNSTT ANDEKNVSDG 120 VKEVDAVLPI TKNRFNVNRY SATATESRFW IPTPAQILVG PMQFACSICS KTFNRYNNMQ 180 MHMWGHGSEF RKGPDSLKGA QPAAMLRLPC YCCAQGCKNN INHPRAKPLK DFRTLQTHYK 240 RKHGAKPFMC RKCGKTFAVK GDWRTHEKNC GKLWYCSCGS DFKHKRSLKD HIRSFGKGHS 300 PRTCVDGFHE DDQKECITGS EDE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna22042.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291611.1	0.0	PREDICTED: zinc finger protein WIP3
Swissprot	Q9SGD1	1e-117	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A2P6QDI6	0.0	A0A2P6QDI6_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004291611.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-115	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	mrna22042.1-v1.0-hybrid

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]