PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21198.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 428aa    MW: 46719.3 Da    PI: 5.2395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21198.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014527123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C+k+F+    +  H+r+H
  mrna21198.1-v1.0-hybrid  5 HICKICNKRFKGGKAMGGHMRSH 27
                             68**********99999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-4228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-8327No hitNo description
SMARTSM003550.025527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034532IPR007087Zinc finger, C2H2
PfamPF139124.2E-9529IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-8235262No hitNo description
SMARTSM003550.11240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367240267IPR007087Zinc finger, C2H2
PfamPF139126.5E-12240264IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
PfamPF139123.3E-7330353IPR007087Zinc finger, C2H2
SMARTSM003550.97331353IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536331358IPR007087Zinc finger, C2H2
PROSITE patternPS000280333353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDKPHICKIC NKRFKGGKAM GGHMRSHLAK LPIPPKQPPP PPPPPATPSP PQRLAHSPEF  60
SSSSSHYIHN NNNNILRIRN INSSVMQMMM VQSPPPAPAT VPASYLKYRE VVDVTTAAAP  120
PSSMDSDSTE SMSKKPTRRR SKRRRKMVVR VVPPPEVSSV TNDTFSSEDC ALSLMMLSRD  180
TWKVKVTNND QVAHVEEEEE EDEEETEDEE EEEEEEEDDV VFVARATPKS ASSNYQGGKY  240
KCDTCKKAFQ SYQALGGHRA SHKRIRHQVF EEEEDDVDAA DDDEESEEEV VEVGGGGNNG  300
RGGGNGGGGS GGVRGYNGHS GVVEHPPPRV FECPFCFKLF DSGQALGGHK KVHYYNNTNT  360
SYYNTNNNVS SNKFPAASTS NTNTNTAARA SSSSANVSSA NYGDNNLVID LNLPAPEEEL  420
EFSTVSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21198.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470645.11e-139PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A2P6SM721e-108A0A2P6SM72_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004309037.13e-65(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3462222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-13C2H2-like zinc finger protein