PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna21035.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 99aa MW: 11285.8 Da PI: 8.8689

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna21035.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.9	2e-14	10	90	18	99
--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +f+ ++ + + s+ + l+ ++g +W k+++++++++ + +GW +F+++n+L++gD++v++l++ +++ v+++r+ mrna21035.1-v1.0-hybrid 10 IQESFVHQYvfQ--GHLSRSVNLQIPNGGTWCAKCTVSRCGEHnyARIHRGWTKFARDNDLQAGDVIVIELIQ---QQPEVHIYRS 90 567788888553..447889*************99888888656778********************98...4567888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.447	1	91	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.4E-13	9	90	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.7E-12	12	90	IPR003340	B3 DNA binding domain
CDD	cd10017	1.17E-15	13	89	No hit	No description
SuperFamily	SSF101936	3.73E-12	19	88	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MRKPISAENI QESFVHQYVF QGHLSRSVNL QIPNGGTWCA KCTVSRCGEH NYARIHRGWT 60 KFARDNDLQA GDVIVIELIQ QQPEVHIYRS QISKMYVG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna21035.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459191.1	4e-60	PREDICTED: uncharacterized protein LOC105349895
STRING	XP_004295953.1	1e-17	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Link Out ? help Back to Top
Phytozome	mrna21035.1-v1.0-hybrid