PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20865.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 407aa    MW: 46114 Da    PI: 9.0106
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20865.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.51.6e-112663031954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yps +e+++LA+++gL+ +qV++WF N R +
  mrna20865.1-v1.0-hybrid 266 FEHflHPYPSDSEKQRLAQQTGLSRTQVSNWFINSRVR 303
                              554459******************************88 PP
2BELL78.59.4e-26132199269
                     BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 
                              r elq k + L  +l+eV+krYk y++q++ v++sFe++ g+g+a+pY s+A ka+ +hF  Lk+ai 
  mrna20865.1-v1.0-hybrid 132 RFELQFKNSSLTIMLDEVYKRYKLYCQQMESVVASFETIDGIGNAAPYMSFAIKAVLKHFGFLKNAIL 199
                              779***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-2479200IPR006563POX domain
PfamPF075262.9E-2784198IPR006563POX domain
SMARTSM003897.1E-11247311IPR001356Homeobox domain
CDDcd000865.02E-12248308No hitNo description
Gene3DG3DSA:1.10.10.601.2E-27250311IPR009057Homeodomain-like
SuperFamilySSF466892.57E-17252317IPR009057Homeodomain-like
PfamPF059203.0E-18264303IPR008422Homeobox KN domain
PROSITE profilePS5007112.681266307IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAGEGFEAFD VPQQSRRDHF RVMNLLTNPP QPQLSLFTPS STMPTHQPPL PLRFSDHDHR  60
RVFERGEFRS SLVPLGPFTG YASILKHSRF LNPAQQLLQD SCGSDRSDSD PPRLLNYFNE  120
RARDQIIGVS DRFELQFKNS SLTIMLDEVY KRYKLYCQQM ESVVASFETI DGIGNAAPYM  180
SFAIKAVLKH FGFLKNAILD ILQSKGKSTV GDFSLVKDDI RGVSKRGLCS QNPSHQNLTS  240
NFHLSEIRSQ RGLPETAVSV MRTWLFEHFL HPYPSDSEKQ RLAQQTGLSR TQVSNWFINS  300
RVRLWKPMVE EIHSLETQQS PMISNSDVTR RNVTAPSLGS YSLENPLHLG TLPQTKRSRT  360
NKHLDMSEQN ETQSNAAAYE NITGNYLHMN SHEGEVSLAL SLQAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-18253311563Homeobox protein Meis2
3k2a_B5e-18253311563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20865.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024175791.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM82e-65BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2P6SKV80.0A0A2P6SKV8_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004307585.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.18e-68TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]