 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
mrna20808.1-v1.0-hybrid |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 225aa MW: 25542.8 Da PI: 8.2458 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna20808.1-v1.0-hybrid | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88.9 | 2.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n + rqvtfskRr g+lKKAeELSvLCda++a+iifsstgkl+ey+s
mrna20808.1-v1.0-hybrid 9 KKIDNATARQVTFSKRRRGLLKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
68***********************************************86 PP
|
| 2 | K-box | 31.8 | 5.9e-12 | 92 | 142 | 19 | 69 |
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 30.572 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 6.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.02E-40 | 2 | 75 | No hit | No description |
| PRINTS | PR00404 | 3.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.01E-31 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 7.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 7.968 | 87 | 174 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.4E-9 | 92 | 142 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009266 | Biological Process | response to temperature stimulus |
| GO:0009910 | Biological Process | negative regulation of flower development |
| GO:0010076 | Biological Process | maintenance of floral meristem identity |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048438 | Biological Process | floral whorl development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MAREKIQIKK IDNATARQVT FSKRRRGLLK KAEELSVLCD ADIALIIFSS TGKLFEYASS 60
SMKEILERHH LHSKNLDKLE QPSLELQLVE NSNYSRLSKE ITAKSHQLRQ MRGEELHGLN 120
LEELQQLEKS LESGMGRVIE KKVVERTDGG RRHVHADSDN RFTEEGQSSE SVTNLCNSNN 180
SPQDYDSSDT SLKLGIDPNK VLRYEGSTLL RRATIFWLTG NSLW*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KP164998 | 1e-136 | KP164998.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM3) mRNA, complete cds. |
| GenBank | LC004730 | 1e-136 | LC004730.1 Malus domestica MdJb mRNA for JOINTLESS like protein MdJOINTLESSb, complete cds. |
