PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20808.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25542.8 Da    PI: 8.2458
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20808.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.6e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i+n + rqvtfskRr g+lKKAeELSvLCda++a+iifsstgkl+ey+s
  mrna20808.1-v1.0-hybrid  9 KKIDNATARQVTFSKRRRGLLKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
                             68***********************************************86 PP
2K-box31.85.9e-12921421969

  




Protein Features
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3D Structure
 

Database
Entry ID
E-value
Start
End
InterPro ID
Description



PROSITE profilePS5006630.572161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.02E-40275No hitNo description
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-31375IPR002100Transcription factor, MADS-box
PfamPF003197.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.96887174IPR002487Transcription factor, K-box
PfamPF014861.4E-992142IPR002487Transcription factor, K-box

 





Gene Ontology ? help Back to Top




GO Term
GO Category
GO Description



GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity

 





Plant Ontology ? help Back to Top




PO Term
PO Category
PO Description



PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage

 




Sequence ? help Back to Top




Protein Sequence    Length: 225 aa    
Download sequence    Send
to blast





MAREKIQIKK IDNATARQVT FSKRRRGLLK KAEELSVLCD ADIALIIFSS TGKLFEYASS  60
SMKEILERHH LHSKNLDKLE QPSLELQLVE NSNYSRLSKE ITAKSHQLRQ MRGEELHGLN  120
LEELQQLEKS LESGMGRVIE KKVVERTDGG RRHVHADSDN RFTEEGQSSE SVTNLCNSNN  180
SPQDYDSSDT SLKLGIDPNK VLRYEGSTLL RRATIFWLTG NSLW*





  




3D Structure ? help Back to Top



Structure
 




PDB ID
Evalue
Query Start
Query End
Hit Start
Hit End
Description



5f28_A3e-22169169MEF2C
5f28_B3e-22169169MEF2C
5f28_C3e-22169169MEF2C
5f28_D3e-22169169MEF2C
 
Search in ModeBase

   

 
  
  







Functional Description  ? help
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Source
Description



UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
 










Binding Motif
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Motif ID
Method
Source
Motif file



MP00272DAPTransfer from AT2G22540Download



Motif logo










Cis-element
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SourceLink
PlantRegMapmrna20808.1-v1.0-hybrid








Regulation -- PlantRegMap  ? help
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Source
Upstream Regulator
Target Gene



PlantRegMapRetrieveRetrieve
 






 




Annotation --
Nucleotide ? help
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Source
Hit ID
E-value
Description



GenBankKP1649981e-136KP164998.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM3) mRNA, complete cds.
GenBankLC0047301e-136LC004730.1 Malus domestica MdJb mRNA for JOINTLESS like protein MdJOINTLESSb, complete cds.

 




Annotation -- Protein
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Source
Hit ID
E-value
Description



RefseqXP_011468571.11e-134PREDICTED: MADS-box protein JOINTLESS 
RefseqXP_011468575.11e-134PREDICTED: MADS-box protein JOINTLESS 
SwissprotQ9FUY67e-93JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2P6RPZ31e-123A0A2P6RPZ3_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004288518.11e-132(Fragaria vesca)

 





Orthologous Group
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LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
  




Best hit in Arabidopsis thaliana ? help
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Hit ID
E-value
Description



AT2G22540.15e-77MIKC_MADS family protein


 

 




Publications
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  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]
    2.