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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna20797.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 23607.7 Da PI: 10.9394 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.9e-12 | 46 | 92 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e ErrRR riNs ++ Lr++lP++ K++Ka++L ++v+ +++L mrna20797.1-v1.0-hybrid 46 KKHSESERRRRMRINSQYAALRKILPNL-----IKMDKASVLAETVRQVREL 92 68*************************9.....6************988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.773 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-9 | 46 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-4 | 46 | 96 | No hit | No description |
SuperFamily | SSF47459 | 8.51E-13 | 47 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-13 | 47 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-10 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 4.12E-6 | 132 | 198 | No hit | No description |
PROSITE profile | PS51671 | 9.109 | 133 | 213 | IPR002912 | ACT domain |
Gene3D | G3DSA:3.30.70.260 | 7.7E-7 | 135 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGSAPSYFSK QIGFPQRYGI GQVNSIYSKK FTKSLSTAEA KVFSAKKHSE SERRRRMRIN 60 SQYAALRKIL PNLIKMDKAS VLAETVRQVR ELKKVVTDID AACRGSGSEC VIPSGVNKLS 120 LEKCEGKQEG LVKATFSCED RAGLISDMTR ELRSRKGKVV KAEMVTVGGR TKIVLWVKGL 180 GAGSEGIVSL KKALNKVIVD RPSIIQKLHL PKRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna20797.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289527.1 | 1e-155 | PREDICTED: transcription factor bHLH131-like | ||||
TrEMBL | A0A2P6RQ07 | 1e-117 | A0A2P6RQ07_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004289527.1 | 1e-154 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 1e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna20797.1-v1.0-hybrid |