PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna20703.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Dof | ||||||||
Protein Properties | Length: 367aa MW: 38605.4 Da PI: 8.6512 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.5 | 7.9e-40 | 43 | 103 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++ mrna20703.1-v1.0-hybrid 43 PEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVR 103 6899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-28 | 34 | 101 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-33 | 45 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.506 | 47 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 49 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1902066 | Biological Process | regulation of cell wall pectin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MMSSDNSPAK KQADDTQQGG GGGGGGGGGT GNSRKTTSSK APPEQALKCP RCDSPNTKFC 60 YYNNYSLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKNK RVRSSSSRLS CSLDSKDSGD 120 SASDHMGLKF FHGISPAMDF QLGGLSLPRL NHHPSSSSAV VTALYNNNNN SQFSPYGDVS 180 VTSGLTLDPS GGATGNNSFM GFNYPLTLGS GSGGGVGFHQ NNMNTAMNVH SSLASSIESL 240 SSINQDLHWK LQQQRLSMLF GTSIAGDSQT QPSQKDLQMN DLEKTQTAAP ILFQNLEISK 300 PKESAGGGDT AATEWFFGNS YAPPPVTPTP TNSGGNGGGN ENNAGNWNSH GVVQAWGDLQ 360 QYNALP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna20703.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289514.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A2P6RPT6 | 0.0 | A0A2P6RPT6_ROSCH; Putative transcription factor C2C2-Dof family | ||||
STRING | XP_004289514.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3854 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 2e-52 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna20703.1-v1.0-hybrid |