PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20264.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 440aa    MW: 48486.5 Da    PI: 8.8676
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20264.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-057597123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  mrna20264.1-v1.0-hybrid 75 FVCEICNKGFQRDQNLQLHRRGH 97
                             89*******************88 PP
2zf-C2H211.80.00077152174123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H +t+
  mrna20264.1-v1.0-hybrid 152 WKCDKCSKIYAVQSDWKAHSKTC 174
                              58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.34E-67497No hitNo description
PfamPF121716.8E-57597IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.34E-6147172No hitNo description
SMARTSM00355180152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSNSTSLSTE EAASVSSGSR LPDHFACLNP LSVSPLDHQQ PPQKIKKKRS LPGNPDPDAE  60
VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSSKD LVKKRAYVCP  120
EPSCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKI YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARI SASQLAIATT PQTSLFPFLN PPHFTNPPSL  240
PFTTLSPWDP TQNPNPNTTQ NPLHHHIKPE QTYHHFPLNP TLFQDTPSPQ HKPQLMTSPF  300
QNLHVSTQPN SSVAMSATAL LQKAATIGAS AAGQQQSHSS GLAEFGTLGG FTSGDLVTWQ  360
KTDRLTRDFL GLTSADGNDC NHGNGAVNVV KDMLTYAGGA VDFQQYHHHD QRLRGNHALL  420
KPQGFGFAET PASETWGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35148212367Zinc finger protein JACKDAW
5b3h_F1e-35148212367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20264.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290634.10.0PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-123IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A2P6PVQ80.0A0A2P6PVQ8_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004290634.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-117indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]