PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

mrna20146.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 287aa MW: 32432.7 Da PI: 5.377

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna20146.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.3e-07	170	212	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r RR+ri ++ +eL +l+P K++ ae+ + A +YIk Lq mrna20146.1-v1.0-hybrid 170 AARERRRRITEKTNELGKLVPCG-----SKMNTAEMFQAAYKYIKFLQ 212 6699****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.589	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-11	167	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-11	167	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-9	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-5	170	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.59E-4	178	216	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MTAMSTTFCS DWGSLQLLNN NPNPNPDYDQ MFSFQTQQDE LAAASILGLD YSIASSLDDP 60 NPLLLSQSFF SDQDFLLDDH EYYYHDEYPK RQKTQQQFHP SFNGFVPNPS FIPELVRPQL 120 PLPPPEFQIQ QQPAAQLYAN YRLSNEVIST EPKMKANSNG GVSLSPQSIA ARERRRRITE 180 KTNELGKLVP CGSKMNTAEM FQAAYKYIKF LQAQVAMLKL MDSVKANKGH GLHNQEGLQV 240 LASPIVQEKL YSEEKCLVSR EFVETLANNQ DFQSKPLLKD NIAKLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna20146.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460417.1	0.0	PREDICTED: transcription factor HEC2
Refseq	XP_011460418.1	0.0	PREDICTED: transcription factor HEC2
TrEMBL	A0A2P6Q6L7	1e-158	A0A2P6Q6L7_ROSCH; Putative transcription factor bHLH family
STRING	XP_009354039.1	8e-62	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3459	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	2e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna20146.1-v1.0-hybrid