PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20134.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31314.2 Da    PI: 6.777
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20134.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.4e-2861110251
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                              rienk+nrqvtf+kRr g++KKA+ELSvLCda+va+i+ ss+gkl++++s
  mrna20134.1-v1.0-hybrid  61 RIENKINRQVTFTKRRLGLFKKAQELSVLCDAQVALIVSSSRGKLFDFAS 110
                              8**********************************************986 PP
2K-box92.85.7e-311272225100
                    K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                              s+ +++e+++++++qe+++Lk ++e+Lq+ qRh+lGedL++L lkeL +Le+qL++ l++ R++K++++l+q+e l++ke +l+e+
  mrna20134.1-v1.0-hybrid 127 SQDNAAESETQNSYQEVSRLKVRYESLQSWQRHFLGEDLDKLRLKELARLEKQLDRTLSRARQRKTQMMLDQLEALRRKESDLEEI 212
                              334479999***************************************************************************** PP

                    K-box  91 nkaLrkklee 100
                              nk+L+++lee
  mrna20134.1-v1.0-hybrid 213 NKQLKSELEE 222
                              ******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-2839111IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-225474IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-2660130IPR002100Transcription factor, MADS-box
PfamPF003191.4E-2361108IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.56761112IPR002100Transcription factor, MADS-box
CDDcd002652.04E-3161122No hitNo description
PRINTSPR004044.7E-227489IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-2289110IPR002100Transcription factor, MADS-box
PfamPF014861.4E-24133220IPR002487Transcription factor, K-box
PROSITE profilePS5129715.634136226IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MACDDVVAVV SSSRFVLQTT PLSSLFKLKD WRVAIPGVLR PTRAPIMGAT NTGTPPQNST  60
RIENKINRQV TFTKRRLGLF KKAQELSVLC DAQVALIVSS SRGKLFDFAS TNDVNEILNR  120
YQCCYSSQDN AAESETQNSY QEVSRLKVRY ESLQSWQRHF LGEDLDKLRL KELARLEKQL  180
DRTLSRARQR KTQMMLDQLE ALRRKESDLE EINKQLKSEL EEREKHDDNT DEEDDDEALI  240
HDRPGGEPTV AAGASQKNIS TKTPSANANQ EPTLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A5e-1760121868MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B5e-1760121868MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C5e-1760121868MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D5e-1760121868MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
6byy_A8e-1760121969MEF2 CHIMERA
6byy_B8e-1760121969MEF2 CHIMERA
6byy_C8e-1760121969MEF2 CHIMERA
6byy_D8e-1760121969MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20134.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1851232e-65HQ185123.1 Fragaria vesca clone VT_863_R T-DNA insertion flanking sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293712.11e-157PREDICTED: MADS-box transcription factor 6-like
SwissprotQ8LLR12e-64MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A2P6SMS01e-122A0A2P6SMS0_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004293712.11e-156(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-42AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]