PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19677.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 493aa    MW: 54916.4 Da    PI: 6.4723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19677.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-057595323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C  Cg+ F +k+ L rH+r+H
  mrna19677.1-v1.0-hybrid 75 CLSCGMNFYSKEALFRHLRSH 95
                             55******************9 PP
2zf-C2H213.60.00019251273123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C+k+F++   L  H+ +H
  mrna19677.1-v1.0-hybrid 251 FRCKLCNKTFTSYQALGGHMTSH 273
                              89******************998 PP
3zf-C2H210.70.0016307328122
                              EEETTTTEEESSHHHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                              y+C++C+++Fs+   L  H ++
  mrna19677.1-v1.0-hybrid 307 YRCNNCDRTFSSFQALGGHKSS 328
                              9**********99888777665 PP
4zf-C2H210.70.0016362384123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C+k+F + + L  H ++H
  mrna19677.1-v1.0-hybrid 362 HRCHVCNKVFASYHALGGHVSSH 384
                              79*************99999988 PP
5zf-C2H2120.00065423445123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ Cg++F +   L  H+r+H
  mrna19677.1-v1.0-hybrid 423 HQCKVCGTTFQTGQALGGHQRLH 445
                              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-53259No hitNo description
SMARTSM003550.783355IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5773360IPR007087Zinc finger, C2H2
PfamPF139128.2E-93355IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
PROSITE profilePS501579.61972100IPR007087Zinc finger, C2H2
SMARTSM003550.837395IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.68E-77495No hitNo description
PROSITE patternPS0002807495IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-7246273No hitNo description
PROSITE profilePS5015711.011251278IPR007087Zinc finger, C2H2
SMARTSM003550.0015251273IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-11251273IPR007087Zinc finger, C2H2
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
PfamPF139122.3E-8306328IPR007087Zinc finger, C2H2
SMARTSM0035517307333IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411307338IPR007087Zinc finger, C2H2
SuperFamilySSF576672.48E-8361384No hitNo description
PfamPF139125.8E-8361386IPR007087Zinc finger, C2H2
SMARTSM003550.068362384IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097362389IPR007087Zinc finger, C2H2
PROSITE patternPS000280364384IPR007087Zinc finger, C2H2
SuperFamilySSF576672.48E-8418445No hitNo description
Gene3DG3DSA:3.30.160.603.8E-4422445IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263423450IPR007087Zinc finger, C2H2
SMARTSM003550.085423445IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-8423445IPR007087Zinc finger, C2H2
PROSITE patternPS000280425445IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDTDHKQTQV LLPNPIVPQQ PTKMPTPPEA LNHICNVCHK GFRSGQALGG HKSMHFRESE  60
AIASAIATTS DLVCCLSCGM NFYSKEALFR HLRSHNQSLS PQGVYNSSSS SSTVSDHSDE  120
AMFDDDGVDS GFDLSKTLPL GWSCTGKRKR TSSDFSGSDE TAVDSSPGLE LVTFDKKLEA  180
EEFRGLLMLA EVCAEEASGR PLVDHDHVYD DEIEIRYVEI KCKRRRLNNE HETRWLATDR  240
YDYNCNDIDE FRCKLCNKTF TSYQALGGHM TSHNRLKNNT ADPDHDSFSF ECKSEQHPHP  300
HPVVNVYRCN NCDRTFSSFQ ALGGHKSSQC KDHVNNNTHS SADNSVVKDN NDPAEPRQDE  360
VHRCHVCNKV FASYHALGGH VSSHSKNKNN NNVDQDQSNS ADTSTGSAEN KNERQKLYQT  420
VPHQCKVCGT TFQTGQALGG HQRLHFKRPT QAPGKSSQQS SARKHLEIDL NEIPSMEDED  480
GIYEPSVILT LS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222226KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19677.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292041.20.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2P6PNL60.0A0A2P6PNL6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004292041.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3461122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-13C2H2 family protein