PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19375.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 24331.9 Da PI: 10.1457 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.4e-12 | 10 | 58 | 43 | 92 |
S-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 43 grsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 sW+vk+ k++++ ++++GW +Fv+ + L++g+f+vF+++g++ f+ mrna19375.1-v1.0-hybrid 10 QGSWDVKV--GKSGNGqLYFKEGWLKFVNHHSLRVGEFLVFEHKGNMVFNV 58 579*****..666666699***********************999888854 PP | |||||||
2 | B3 | 64.3 | 1.9e-20 | 106 | 193 | 1 | 87 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f ++++ps+ k+ + +p +f+e++g+ +++ +tl d+s W+v l++ +kk++r+++++GW eF +an+L+++D+++F+ mrna19375.1-v1.0-hybrid 106 FRTIMKPSHRDKRnPYMNIPPSFVEANGIAHKS--SMTLIDPSRHHWKVDLKHwkEKKRQRVTMARGWTEFYRANKLNDRDVCIFE 189 678899999998844689*********988766..59999***********9955566666************************* PP E-SS CS B3 84 ldgr 87 l+++ mrna19375.1-v1.0-hybrid 190 LHQK 193 8764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.56 | 1 | 69 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.575 | 1 | 64 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-13 | 10 | 64 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-13 | 10 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.19E-10 | 12 | 58 | No hit | No description |
Pfam | PF02362 | 3.7E-9 | 12 | 58 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-21 | 102 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-23 | 102 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-16 | 104 | 194 | No hit | No description |
SMART | SM01019 | 6.0E-17 | 106 | 199 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-17 | 106 | 193 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 107 | 209 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDAAMIQSCQ GSWDVKVGKS GNGQLYFKEG WLKFVNHHSL RVGEFLVFEH KGNMVFNVVS 60 YGLSACEKEY HFPSDSMVNG RMTTPHETQR VKRPRDDNLE GGTHFFRTIM KPSHRDKRNP 120 YMNIPPSFVE ANGIAHKSSM TLIDPSRHHW KVDLKHWKEK KRQRVTMARG WTEFYRANKL 180 NDRDVCIFEL HQKTAVSKNV VVNVKICCH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19375.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306894.1 | 1e-147 | PREDICTED: B3 domain-containing protein REM9-like | ||||
Refseq | XP_004306898.1 | 1e-148 | PREDICTED: B3 domain-containing protein Os03g0212300-like | ||||
STRING | XP_004306893.1 | 1e-147 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14574 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 3e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna19375.1-v1.0-hybrid |