PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19138.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 695aa    MW: 76896.2 Da    PI: 6.7416
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19138.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-22139239198
                              EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                              f+k+lt sd++++g +++ +k+a+++     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +v
  mrna19138.1-v1.0-hybrid 139 FCKILTASDTSTHGGFSVLRKHANDClppldMNQATPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFV 224
                              99*********************999****9555556679********************************************** PP

                              EEE-SSSEE..EEEEE- CS
                       B3  82 Fkldgrsefelvvkvfr 98 
                              F +    ++el v+v+r
  mrna19138.1-v1.0-hybrid 225 FLRG--GNGELGVGVRR 239
                              **43..67888999987 PP
2Auxin_resp104.61.2e-34265344183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ha+ t++ F v+Y+Pr+  s+F+v ++k+++a+++k+svGmRfkm+fe+eds+err++Gt+vgv dl+p +W +SkWrsLk
  mrna19138.1-v1.0-hybrid 265 ASHAVMTSTLFVVYYKPRT--SQFIVGLNKYLEAINNKFSVGMRFKMRFEGEDSPERRFTGTIVGVGDLSP-HWAESKWRSLK 344
                              6899**************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-40129268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-39132254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-19138239No hitNo description
PROSITE profilePS5086312.041139241IPR003340B3 DNA binding domain
SMARTSM010193.1E-20139241IPR003340B3 DNA binding domain
PfamPF023622.1E-20139239IPR003340B3 DNA binding domain
PfamPF065073.1E-32265344IPR010525Auxin response factor
PfamPF023098.8E-10581672IPR033389AUX/IAA domain
SuperFamilySSF542773.27E-11586667No hitNo description
PROSITE profilePS5174524.728591672IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MAACITVLSF WMAHSQCDSS SVSRGGDTGY GSALYTELWK LCAGPLVDVP RIGERVFYFP  60
QGHMEQLEAS TNQELNPQIP RFNIPSKILC QVVNIQLLPE RDTDEVYAQI TLLPEPDQSE  120
PTSPDPCVPE PPTPATYSFC KILTASDTST HGGFSVLRKH ANDCLPPLDM NQATPTQELA  180
AKDLHGYEWK FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGGN GELGVGVRRL  240
ARQQTPMPSS VISSQSMHLG VLATASHAVM TSTLFVVYYK PRTSQFIVGL NKYLEAINNK  300
FSVGMRFKMR FEGEDSPERR FTGTIVGVGD LSPHWAESKW RSLKVQWDEH ATVPRPDRVS  360
PWEIEPFVAS VPLNLAQPVV KSKRPKTVEI ASSEITTNST ASPFWYQGSN QSAEPTQLGC  420
VAEVQSCGSQ VVWPPRQKDS NGSGYSSSRI CAEGIWPSSP NVNVSLSLFA DSQEGNKNAT  480
MGSMLPNFSS PSSKTSNGPV HDQLETGKKF ESSGFRLFGY DVPKAITANL REKEPMFTTV  540
CSGAKGPILA AASELDQDPN ISRISKEQMQ LISEVPPIET QSKQGSTVSM RSRTKVHMEG  600
VAVGRAVDLT ALKGYDDLID ELEKMFEIKG ELRPANKWAV VFTDDENDMM LLGDYQWQDF  660
CRTVKKIFIF SSDHVQMLRQ GKLKSSALLC EENVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1733336718355Auxin response factor 1
4ldw_A1e-1733336718355Auxin response factor 1
4ldw_B1e-1733336718355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19138.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306655.10.0PREDICTED: auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P6SIM70.0A0A2P6SIM7_ROSCH; Auxin response factor
STRINGXP_004306655.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9