PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18922.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 302aa    MW: 34560.6 Da    PI: 5.058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18922.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1895146155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +g+W+AeIrdp     k+kr +lg+f taeeAa ++++ + +l+g
  mrna18922.1-v1.0-hybrid  95 KKFRGVRQRP-WGKWAAEIRDP---LlKSKRRWLGTFNTAEEAALRYDREAIELRG 146
                              59********.**********8...3456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.52E-3095162No hitNo description
PfamPF008475.1E-1196146IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2096153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2796152IPR001471AP2/ERF domain
PROSITE profilePS5103221.45696154IPR001471AP2/ERF domain
SMARTSM003803.2E-3296166IPR001471AP2/ERF domain
PRINTSPR003672.4E-997108IPR001471AP2/ERF domain
PRINTSPR003672.4E-9120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSSHPTTKF TEKRFVTDKL VKPLRHLALP KIVRISFTDQ DATDTSSDDE EQQQQQRVTR  60
RVINEVRIEE SEAVRVLLAK NQQQKPINSL PEEKKKFRGV RQRPWGKWAA EIRDPLLKSK  120
RRWLGTFNTA EEAALRYDRE AIELRGPNAR TNIIPPPKFP VSDHRSSSNE SISINLSSSN  180
LCSSNMSTSM DQIVVIDEYD SGKECQSNIR SPTSVLSSSD NEWRPVSKEK DESHFVGYFD  240
GVINPEAILF GISEPTLWEE MNMVPETMLR EDLSDISLDS VGDFRSCKWN AEDFFQDQCG  300
GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1995152158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18922.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468950.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A3Q8TA050.0A0A3Q8TA05_FRAAN; Transcription factor ERF51
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.18e-29cytokinin response factor 5