PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18562.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 476aa    MW: 53995.5 Da    PI: 4.7109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18562.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.46.4e-801074702373
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                              +elL++ Aeav++++   a++++a+l+ l   s++g +++++la +f ++L+ + ++ ++++     p + + ++ ++++++++++
  mrna18562.1-v1.0-hybrid 107 TELLFAGAEAVEAQNWVFASNIIAKLNILllGSENGdNSFHKLAMFFSQGLHYKTSN-SPQV-----PHKPAVSRNTDTMSSFQML 186
                              789************************98887888868****************999.3333.....334444556799999**** PP

                     GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA 169
                              +e+sP++kf+h+taNqaIle+++++e +H+iDfdi++G QWp+L+  La R+ +  +slR+T+v   +++s+   ++tg+rL++f 
  mrna18562.1-v1.0-hybrid 187 QELSPYVKFAHFTANQAILESTQEDEDIHVIDFDIMEGSQWPSLMVDLAMRKgRRCASLRVTAVTV-DQQSAALAQQTGRRLKEFS 271
                              ****************************************************55567********9.55789999*********** PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnse 251
                              e+++++f f+ +++ + ed  + +++v  ++a++ n++++  +++++s s  +   ++L  + +lsPk++v+v++e     ++ s 
  mrna18562.1-v1.0-hybrid 272 ESINLSFIFDQMMVATEED--FPKIEVI-DDAVIANCMIHQLHMPNRSISFVK---TFLGGMSKLSPKLIVLVQEElfnfYKMPSM 351
                              ***********76665554..4777665.678888999999999999999999...********************7665566888 PP

                     GRAS 252 sFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaak 335
                               F+e f+eal++y al dsl ++++re     + +E+e+lg +i + v +   e++er+     W++ + +  GFk++pls+++++
  mrna18562.1-v1.0-hybrid 352 FFAEFFSEALHHYNALCDSLVSSFSREYkMGLRQIEKEVLGVKILESVRQFPCEKEERML----WEDCFASlKGFKSIPLSSSNVS 433
                              9*******************99999998345679*******************9777766....*****9868************* PP

                     GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              qak+l++ ++ +gy v++e+g l l+Wk+rpL+s+S W
  mrna18562.1-v1.0-hybrid 434 QAKYLVSLFH-RGYWVQHEKGRLSLCWKSRPLTSASIW 470
                              **********.*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.2480452IPR005202Transcription factor GRAS
PfamPF035142.2E-77107470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEVELIDHPF NPSYIDELYD CSFESDSSFQ TSDLFTPCTT SVDRNLDHEC LDRLQQIEAQ  60
LMDIDSSISE SDVIDVNGLV GSVHVLTEGN SLLKEIQIEW LEESSLTELL FAGAEAVEAQ  120
NWVFASNIIA KLNILLLGSE NGDNSFHKLA MFFSQGLHYK TSNSPQVPHK PAVSRNTDTM  180
SSFQMLQELS PYVKFAHFTA NQAILESTQE DEDIHVIDFD IMEGSQWPSL MVDLAMRKGR  240
RCASLRVTAV TVDQQSAALA QQTGRRLKEF SESINLSFIF DQMMVATEED FPKIEVIDDA  300
VIANCMIHQL HMPNRSISFV KTFLGGMSKL SPKLIVLVQE ELFNFYKMPS MFFAEFFSEA  360
LHHYNALCDS LVSSFSREYK MGLRQIEKEV LGVKILESVR QFPCEKEERM LWEDCFASLK  420
GFKSIPLSSS NVSQAKYLVS LFHRGYWVQH EKGRLSLCWK SRPLTSASIW VPLTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3611447226379Protein SCARECROW
5b3h_D2e-3611447226379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18562.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308265.20.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P5EDE60.0A0A2P5EDE6_TREOI; GRAS transcription factor
STRINGXP_004308265.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-47GRAS family protein