PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18470.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 318aa MW: 35323.3 Da PI: 7.8257 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H mrna18470.1-v1.0-hybrid 58 YSCSFCRREFRSAQALGGHMNVH 80 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.78E-6 | 55 | 84 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEQARYWMWA KRKHSSLMSA SHEVQVPSSH DESSWEEQAF AEDAAGPLGG CIWPPRSYSC 60 SFCRREFRSA QALGGHMNVH RRDRARLKQS PNEQNVETAH HHHGLPDQDH QDISVQINPF 120 SSTLGTFHQY PSHHQVCALV YNPNNPSSNP LSSPSRVSAQ LPGKNQICGQ EQITLNIPTS 180 RSSSVSNPPS RSILTGNRYY NNSVARNTEA AEKISRIVES GSCRANKGGD YVTTDLSVSL 240 NLVVRCARPS VSAGSDEDEA IISCKRRRIM EEKPSSKDSL PFFLKSEGFE VLSRPSSIEE 300 LDLELRLGDR PKVIKVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 53 | 80 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 53 | 80 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 268 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18470.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU830923 | 0.0 | GU830923.1 Fragaria virginiana subsp. virginiana Superman-like protein FRASUP5 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302772.1 | 0.0 | PREDICTED: uncharacterized protein LOC101303530 | ||||
TrEMBL | D5LGH3 | 0.0 | D5LGH3_FRAVR; Superman-like protein FRASUP5 | ||||
STRING | XP_004302772.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 3e-31 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | mrna18470.1-v1.0-hybrid |