PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18468.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 184aa    MW: 20554.9 Da    PI: 8.653
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18468.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213052123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C+ C++ Fs+   L  H++ H
  mrna18468.1-v1.0-hybrid 30 YACTFCKRGFSNAQALGGHMNIH 52
                             89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-62756No hitNo description
Gene3DG3DSA:3.30.160.604.4E-52755IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2813057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKRNDTVEKF NRSKWTSNDQ ISGLGQAKSY ACTFCKRGFS NAQALGGHMN IHRRDRARII  60
RQYSEDQNQV SSSDAVKCPS TSAHHDPLRA NDSEEKTLLQ LERKGTNMIS RKPSCPSSTR  120
SENHEIVARS EGKISSSEDV QAQLQLPLFL EEPVVSNGGG KFVELDLELR LGPEKNFITR  180
EFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18468.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466534.11e-135PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A314XVT07e-45A0A314XVT0_PRUYE; Transcriptional regulator TAC1
STRINGXP_004305187.11e-118(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-15C2H2 family protein