PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18205.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 175aa    MW: 19615.9 Da    PI: 10.5554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18205.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00133961123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C++ F++   L  H  +H
  mrna18205.1-v1.0-hybrid 39 FECKTCNRKFPSFQALGGHRASH 61
                             89**********99999998887 PP
2zf-C2H216.52.4e-0588110123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg +Fs+   L  H+r+H
  mrna18205.1-v1.0-hybrid  88 HECSICGLVFSSGQALGGHMRRH 110
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.86E-938110No hitNo description
PfamPF139124.0E-123862IPR007087Zinc finger, C2H2
SMARTSM003550.153961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4523966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-486111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.74388111IPR007087Zinc finger, C2H2
PfamPF139129.5E-1288111IPR007087Zinc finger, C2H2
SMARTSM003550.008288110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKRTREEVVG VDMDKVLMLL SYRLETKFKR CSSSPNDVFE CKTCNRKFPS FQALGGHRAS  60
HKPRSTVMDT DQDPKSETKL MQSKLKKHEC SICGLVFSSG QALGGHMRRH SIVNSRFSAT  120
IPASSASKMK TPVLMRSNSK RVMRLDMDLN LTPLENDLKL LFGNMAPKVD TLFS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18205.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466599.11e-126PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD45e-36ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2P6RA841e-100A0A2P6RA84_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004305218.11e-126(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.18e-39C2H2 family protein