PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17988.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 154aa    MW: 16934 Da    PI: 10.1128
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17988.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-052244123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ykC +C k+F++   L  H++ H
  mrna17988.1-v1.0-hybrid 22 YKCRHCEKTFRNGQALGGHQNAH 44
                             9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.02E-62046No hitNo description
PfamPF139123.2E-72146IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3462249IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-42244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAPSSEANSV HSTATSGPGE VYKCRHCEKT FRNGQALGGH QNAHRSVHRG VMRRIADAVG  60
SLRNPQQLAA GPASFESCEV NQVVHLRRKI EPQNPREGKT RVFKDWRDKA AVDSDSERTV  120
SESVVPKRPF HKRNGEEVMS APQNVDLELK LGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17988.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468533.11e-111PREDICTED: uncharacterized protein LOC105352668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-07C2H2 family protein