PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17987.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 143aa    MW: 15161.4 Da    PI: 9.0098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17987.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-052143123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C +C+ksF++ + L  H++ H
  mrna17987.1-v1.0-hybrid 21 FQCRHCPKSFNNGHALGGHQNAH 43
                             89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-41645IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.18E-61745No hitNo description
PROSITE profilePS5015710.9072148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAPSCKTTSE DSTANSGPKR FQCRHCPKSF NNGHALGGHQ NAHRGLDKGF MKTLKQIIRA  60
TYREQFPGNP SSPSVAAAAK LLPSAEVLAG LGVVKPGRLT EPELPGGGRT IDFLTQWKPV  120
CTGPIVPVEI EETLDLELKL GS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17987.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3418922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-07zinc finger protein 2