PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17984.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 137aa    MW: 14927.3 Da    PI: 7.0257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17984.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-051638123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C  C+k+++++  L  H + H
  mrna17984.1-v1.0-hybrid 16 YVCAFCSKTYPSSQALAGHSNIH 38
                             9******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.04E-51339No hitNo description
Gene3DG3DSA:3.30.160.604.6E-41438IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.1621638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MSNKSDLSAA KTSRTYVCAF CSKTYPSSQA LAGHSNIHRP WYLCREVFNI FAFADLDDSQ  60
GPLSPNPLNY RWPDDEPHVS RPFHSFRPTE LYDRAPADPT AAESSTRRSG SGPISDQAGG  120
SSHGCSLGEN PKKYDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17984.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468531.19e-98PREDICTED: transcriptional regulator SUPERMAN-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-06C2H2 family protein