PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17107.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 811aa    MW: 89394.4 Da    PI: 8.9526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17107.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.3e-15532621199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                              ffkvl   d ++++ l++p kf++ h + +  + + +l+ + g++ +v+l  ++++++ ++ + GW +Fvk++ L+ gDf+vF++d
  mrna17107.1-v1.0-hybrid 532 FFKVL--LDDFANH-LRIPHKFTRYH-IRPSLG-KCVLRGPCGKR-SVEL--ERRKNGlFFHSHGWHSFVKDHLLQFGDFLVFQYD 609
                              89999..9*****9.********766.444444.899***99976.6888..666666588899********************** PP

                              SSSEE..EEEEE-S CS
                       B3  86 grsefelvvkvfrk 99 
                              g+s+f  +vkv+++
  mrna17107.1-v1.0-hybrid 610 GKSKF--KVKVYDR 621
                              99999..9998887 PP
2B3413.4e-137157941298
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              ++ r+ +pk+ + + g+k  ++ t+ +ed++gr W  kl    k++ + +++GW e  kan++ +gD+vvF+++++  + ++++vf
  mrna17107.1-v1.0-hybrid 715 SRYRMAIPKDLVVSKGLK--SKNTVEIEDSTGRLWPAKL---VKGNYVSMSTGWGECSKANNIVVGDTVVFEFVQQ--TVMRLHVF 793
                              56799**********999..4559***************...555678899*********************8874..44566666 PP

                              - CS
                       B3  98 r 98 
                              +
  mrna17107.1-v1.0-hybrid 794 K 794
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd131326.31E-15138460No hitNo description
PfamPF015548.0E-3248207IPR002528Multi antimicrobial extrusion protein
TIGRFAMsTIGR007973.0E-7448439IPR002528Multi antimicrobial extrusion protein
PfamPF015545.9E-26269430IPR002528Multi antimicrobial extrusion protein
SuperFamilySSF1019362.55E-19527627IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-19527624IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.052529622IPR003340B3 DNA binding domain
CDDcd100177.02E-18530620No hitNo description
SMARTSM010195.2E-15532622IPR003340B3 DNA binding domain
PfamPF023622.9E-12532621IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-16699795IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-16699795IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-14705796IPR003340B3 DNA binding domain
CDDcd100174.76E-12705794No hitNo description
PfamPF023629.5E-11715794IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279718796IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006855Biological Processdrug transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MPENTASSDT NAAVPLLESG VDGGEGLRWW NKVLDVEEAK NQVLFSLPMI LTNVFYYLIT  60
LVSVMFAGHL GELELAGATL ANSWAVVTGF AFMVGLSGAL ETLCGQGFGA KSYRMLGIYL  120
QASSIISFLF SIIISAVWFY TEPILILLQQ DPQISMSAAV YIKYLIPGLF AYGFLNNILR  180
FLQTQSVVMP LVFLSAIPLV FHIGIAYGLV HWTALGFKGA PLAASISLCI SFLMLATYVV  240
CAKKFEHTWE GFSLESFHYV LTDLKLALPS AAMVCLEYWA FEILVLLAGL MPNSEQTTSL  300
IAMCVNTETI AYMLTYGLSA AASTRVSNEL GEGNPDRAKN AMAVTLKLSV LLGVLVVLAL  360
ALGHNIWAGF FSDSTTIIKQ FAYMTPFLAI SIMLDSVQGV LSGVARGCGW QHLAVYVNLG  420
TFYLIGVTIA CLLAFKLKLY AKVFVVPSAA ALVLKALMEL EGDRKKVKNI MLNGAIEIAK  480
IDEDVRSAGV LLKNPDSSAK TISMKTQILE SLISGAKLKA EMGRKPTKQP SFFKVLLDDF  540
ANHLRIPHKF TRYHIRPSLG KCVLRGPCGK RSVELERRKN GLFFHSHGWH SFVKDHLLQF  600
GDFLVFQYDG KSKFKVKVYD RTCCEIDVEV PKRRNGLPTA PSVNEGYQLA WVKDEILDGL  660
ETENCNSDTE NADKRRRNNY GRTPKVEDGK ETSTRPIIFK SEYSCFQATL KGRCSRYRMA  720
IPKDLVVSKG LKSKNTVEIE DSTGRLWPAK LVKGNYVSMS TGWGECSKAN NIVVGDTVVF  780
EFVQQTVMRL HVFKKGLGTR GGNNVYFCGT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xjj_A2e-86304425417multi drug efflux transporter
5yck_A3e-863844212416multi drug efflux transporter
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for protection of the roots from inhibitory compounds. When expressed in a heterologous system, confers resistance to tetramethylammonium chloride. {ECO:0000269|PubMed:11449055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17107.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296523.10.0PREDICTED: MATE efflux family protein LAL5-like isoform X2
SwissprotQ9LUH20.0DTX19_ARATH; Protein DETOXIFICATION 19
TrEMBLA0A2P6QAM90.0A0A2P6QAM9_ROSCH; Protein DETOXIFICATION
STRINGXP_004296523.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-16B3 family protein
Publications ? help Back to Top
  1. Diener AC,Gaxiola RA,Fink GR
    Arabidopsis ALF5, a multidrug efflux transporter gene family member, confers resistance to toxins.
    Plant Cell, 2001. 13(7): p. 1625-38
    [PMID:11449055]
  2. Li L,He Z,Pandey GK,Tsuchiya T,Luan S
    Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification.
    J. Biol. Chem., 2002. 277(7): p. 5360-8
    [PMID:11739388]
  3. Hvorup RN, et al.
    The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily.
    Eur. J. Biochem., 2003. 270(5): p. 799-813
    [PMID:12603313]
  4. Marinova K, et al.
    The Arabidopsis MATE transporter TT12 acts as a vacuolar flavonoid/H+ -antiporter active in proanthocyanidin-accumulating cells of the seed coat.
    Plant Cell, 2007. 19(6): p. 2023-38
    [PMID:17601828]