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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna16564.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 378aa MW: 40832.8 Da PI: 6.8562 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.4e-10 | 225 | 269 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L mrna16564.1-v1.0-hybrid 225 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 269 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-15 | 218 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.53E-11 | 218 | 274 | No hit | No description |
PROSITE profile | PS50888 | 16.526 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 222 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 225 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-12 | 226 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MAGNPPEGLG DDFFEQIMAV PQPYSGGSAS AADSGRGYGD VGSMPMVLQL GSGTGSSSGY 60 RGGGGSVGMG MGMPLGLNLE QGFLGHDRFR DEVERNSNTN NSNNNNNGNS SSERDNSVHM 120 TTSLFPAAFG HLQNHSSVRP TPPPPPQPHQ VFYKMVKGIV DSFQQTRAWF LQEVVCFYTR 180 WSERGVNACP QFHSQPAPAP TAAVHQPPAI RPRVRARRGQ ATDPHSIAER LRRERIAERM 240 KALQELVPSC NKTDRAAMLD EIVDYVKFLR LQVKVLSMSR LGGAGAVAQL VADVPLSAVE 300 GEGIEGGTNN QQAWEKWSND GTEQQVAKLM EEDVGAAMQY LQSKALCIMP ISLAPAIFRT 360 HQPDTTTMVK PESHNSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 229 | 234 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna16564.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465955.1 | 0.0 | PREDICTED: transcription factor UNE12 isoform X2 | ||||
Swissprot | O22768 | 6e-84 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A314YM14 | 1e-159 | A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2 | ||||
STRING | XP_004302053.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11205 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-61 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna16564.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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