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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna16523.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | CPP | ||||||||
Protein Properties | Length: 1248aa MW: 137913 Da PI: 6.4217 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.3 | 1.8e-14 | 972 | 1010 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnC++skClk+YCeCfaag +C e C+C +C+Nk+ mrna16523.1-v1.0-hybrid 972 ACKRCNCRRSKCLKLYCECFAAGLYCVEPCSCFNCFNKS 1010 689**********************************97 PP | |||||||
2 | TCR | 47.8 | 2.9e-15 | 1064 | 1103 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYC Cf+ g+ Cs +CkC +CkN+ mrna16523.1-v1.0-hybrid 1064 RHKRGCNCKKSSCLKKYCVCFQGGAGCSLQCKCVGCKNTF 1103 589***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.1280.50 | 1.1E-6 | 22 | 68 | No hit | No description |
SuperFamily | SSF81383 | 7.33E-10 | 22 | 78 | IPR001810 | F-box domain |
PROSITE profile | PS50181 | 9.074 | 22 | 71 | IPR001810 | F-box domain |
Pfam | PF00646 | 3.9E-8 | 25 | 69 | IPR001810 | F-box domain |
SMART | SM00256 | 5.6E-4 | 28 | 68 | IPR001810 | F-box domain |
SMART | SM01114 | 1.1E-16 | 971 | 1012 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 33.834 | 972 | 1104 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.4E-10 | 974 | 1009 | IPR005172 | CRC domain |
SMART | SM01114 | 7.2E-16 | 1064 | 1105 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.0E-11 | 1066 | 1102 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1248 aa Download sequence Send to blast |
MGDVTTSKRS KALSSESVAA PEDLIDELPE CLLVDILCRL PRNTVVQCKR VSKSWLTLIS 60 KPCFHAHFLS LQKHNPPFET TLMFVRTSAL EIQSFTIPLK HTRVSNVLKF SHIYNVVAGT 120 CNDLVLWCAT PMFQIRCYYI SNPYTNHCVP LPLAPQCHQA HVVVGLICDS YHRCKVVRIL 180 ECEEESALFM VEIFSSETSE WTQAVVPFPQ GLTYDDIRSS VNNVGLACNG TLYWLVSSGL 240 VIGLDPSQFD NSCIPSAATV PANHNFHYSF ISKPDVDAGL SASSSCEQCL TVFRGRLSLC 300 QFYNEGPPSP ILYVWDLKED DHEMDGVGRK SVKWCLKEKI VLDELIASLY WKPLAFHPND 360 EDKLYALCYY PRNNAKKCFI CEYNIRKSGR SAIRISEIPL QNRVDAFPLL IPGVRLPTPV 420 PGLDSISTAM SLGQQINDSH SQLNSSHLRQ EIEQMAEQKE IQVPKESPVS NFISNLSPIE 480 PIKFIRNDHT FNSLSFASPP SGFTPPHIVS PCRNKLLQKR HHFSEAWEPG ISRSCNLNST 540 SDGDSIVSEQ LECSVIGDLV PAESLELAAE LPSTLKLSCG SPESNVVPFD ATKADGTPES 600 VVQSYIHQPK GGHSSSEREA HLLRICRAGF DWEMSVSDAD DLLNFDFEII EENSAEEDPK 660 TGDPGVMSFV SNILVDNHND VEIRHTADPM GSSEQFALKK FSNSETEYFV SKTVDGGTVS 720 FILDNLQENH NGKELVETVG PIDSSEQCES EKFSTSEPIW DLMEIEQAPS ILSRPLLDLN 780 VNPSNTVDVK RHKCTPPSCK PSSQSHTIHR RCLVFDKAET HKRKLVSDSS GTCSVSMRSN 840 CEAPTVVKEL IQTTTGMVCA FSSARLPGIG LHLNALATPC ETNLTVKTLA SESQVMSMPD 900 SKTCYTTITP GEDSRDESLI LNYSEDESVA CKNGAHLAES TLQTCKHTFE ESEHSSPKRK 960 SVETKHVGES RACKRCNCRR SKCLKLYCEC FAAGLYCVEP CSCFNCFNKS IHVEIVHETR 1020 RLIELRNPLA FAPRVVGSAE AVSQFVTPNI PMQEETKSTP TSARHKRGCN CKKSSCLKKY 1080 CVCFQGGAGC SLQCKCVGCK NTFGQKGGQR LSGGLGSEDT EVEGESGVHE KNDPMILSEI 1140 CRSPPDQLPT TDLNRTSEQI SLHSSQSSSP RLEKHLQAIP EEETFEALDR PKTSQPSSIC 1200 VKSASPNSKR VSPPHSHNSI GKFGSLKSWK GGRKLTLRSV PLPFTNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-15 | 970 | 1101 | 8 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-15 | 970 | 1101 | 8 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna16523.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304737.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_011465933.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_011465934.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_011465935.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A251NZQ1 | 0.0 | A0A251NZQ1_PRUPE; Uncharacterized protein | ||||
STRING | XP_004304737.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 4e-68 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | mrna16523.1-v1.0-hybrid |