PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16487.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GeBP
Protein Properties Length: 433aa    MW: 46336.3 Da    PI: 4.4832
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16487.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.43.3e-36132235297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.......spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 
                              lfqrlw+++Dei lLqG++d+++++g         +++ d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++sgke+s
  mrna16487.1-v1.0-hybrid 132 LFQRLWTDDDEIELLQGFLDYTTQRGNkggggggGSHQnDTALFYDQIKSKLQLEFNKNQLVEKLRRLKKKYRNVLNKIASGKEVS 217
                              79***********************99888898845555*********************************************** PP

                   DUF573  80 fskehdqkifelskkiWg 97 
                              f+++hdq +fe+s+kiW 
  mrna16487.1-v1.0-hybrid 218 FKSPHDQATFEISRKIWS 235
                              *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-33133235IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MTPEQDDAVL PEAGGDLSSS SQDDEEEDDV VDEDDDDDVD DDDDVINSAS PSSTSNSALP  60
VAIATPTATA PPAVTVALPA PPLTSAAAAT AVVVPEGLLD PKRPRTIHYD PVLLPAAPEE  120
KKPVAVVDER RLFQRLWTDD DEIELLQGFL DYTTQRGNKG GGGGGGSHQN DTALFYDQIK  180
SKLQLEFNKN QLVEKLRRLK KKYRNVLNKI ASGKEVSFKS PHDQATFEIS RKIWSNIGGV  240
GAGGADDNAL DDEDPNPNPN NPNFNHFEVK TEDAPAGFQK STPRSRKRQR PPAQPKTPSL  300
AEPVAVPVIK ENHHNVNNGG VGVGGGSNCG NCNVQGMIEE TVKSCMSPLF RQLMSNSMGG  360
GQTRGFGGLS LNPIPLTFGG PSINLNFGGG EAADEQWRKQ QILELEVYSK RLELVQNQIK  420
VALDELKSTG GG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16487.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465920.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A2P6R6831e-171A0A2P6R683_ROSCH; Putative transcription factor GeBP family
STRINGXP_004304723.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-75DNA-binding storekeeper protein-related transcriptional regulator