 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
mrna16486.1-v1.0-hybrid |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
| Family |
GeBP |
| Protein Properties |
Length: 300aa MW: 35114.7 Da PI: 5.2561 |
| Description |
GeBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna16486.1-v1.0-hybrid | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF573 | 75.9 | 6.8e-24 | 103 | 197 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdq 86
+r+ws+eDe+ lL+ ++d++++ ++ fy+ v+ + + +++k+ l eK+ rLKkK+++ vkk ++g e++f+++hd+
mrna16486.1-v1.0-hybrid 103 RKRVWSKEDELELLKNFLDYRTRPR--TANEAPSFYDEVNPKFKEQYTKRKLAEKLGRLKKKYRNVVKKmmNNNGTEFRFRNPHDS 186
68******************77766..568999************************************88899************ PP
DUF573 87 kifelskkiWg 97
if++s++iW
mrna16486.1-v1.0-hybrid 187 AIFDISHRIWA 197
**********6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MPWPLLKWIM YTSSSSSSSS EDFDEEEEEG INKKENEHRR ESNKQGEQNN DEDSDDDDFS 60
YEPQEEETSN SSDYTFTIDE PRRKRRRIDN KEFSPNVTSF KRRKRVWSKE DELELLKNFL 120
DYRTRPRTAN EAPSFYDEVN PKFKEQYTKR KLAEKLGRLK KKYRNVVKKM MNNNGTEFRF 180
RNPHDSAIFD ISHRIWAESP LYNIQEKNVV VDSHDVGSSK TSFDGKHGDD EGNTDVRGMI 240
IGLAMNPIPL SLSNYGCRGG DVADEKWREQ QILELEAYSK RLELVQQQVK AALDDLRSK*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 82 | 86 | RKRRR |
| 2 | 83 | 87 | KRRRI |
| 3 | 84 | 104 | RRRIDNKEFSPNVTSFKRRKR |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G28040.1 | 1e-22 | DNA-binding storekeeper protein-related transcriptional regulator |
