PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16486.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GeBP
Protein Properties Length: 300aa    MW: 35114.7 Da    PI: 5.2561
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16486.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.96.8e-24103197397
                   DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdq 86 
                               +r+ws+eDe+ lL+ ++d++++      ++   fy+ v+ + + +++k+ l eK+ rLKkK+++ vkk   ++g e++f+++hd+
  mrna16486.1-v1.0-hybrid 103 RKRVWSKEDELELLKNFLDYRTRPR--TANEAPSFYDEVNPKFKEQYTKRKLAEKLGRLKKKYRNVVKKmmNNNGTEFRFRNPHDS 186
                              68******************77766..568999************************************88899************ PP

                   DUF573  87 kifelskkiWg 97 
                               if++s++iW 
  mrna16486.1-v1.0-hybrid 187 AIFDISHRIWA 197
                              **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-25104196IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MPWPLLKWIM YTSSSSSSSS EDFDEEEEEG INKKENEHRR ESNKQGEQNN DEDSDDDDFS  60
YEPQEEETSN SSDYTFTIDE PRRKRRRIDN KEFSPNVTSF KRRKRVWSKE DELELLKNFL  120
DYRTRPRTAN EAPSFYDEVN PKFKEQYTKR KLAEKLGRLK KKYRNVVKKM MNNNGTEFRF  180
RNPHDSAIFD ISHRIWAESP LYNIQEKNVV VDSHDVGSSK TSFDGKHGDD EGNTDVRGMI  240
IGLAMNPIPL SLSNYGCRGG DVADEKWREQ QILELEAYSK RLELVQQQVK AALDDLRSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18286RKRRR
28387KRRRI
384104RRRIDNKEFSPNVTSFKRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16486.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468357.10.0PREDICTED: uncharacterized protein LOC105352569
TrEMBLA0A2P6R6801e-179A0A2P6R680_ROSCH; Putative transcription factor GeBP family
STRINGXP_008218225.14e-70(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-22DNA-binding storekeeper protein-related transcriptional regulator