PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16285.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 335aa    MW: 37079.9 Da    PI: 6.388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16285.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.19.4e-08127149123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C++Cgk F+r  nL+ H+r H
  mrna16285.1-v1.0-hybrid 127 HYCEICGKGFKRDANLRMHMRAH 149
                              68*******************99 PP
2zf-C2H210.70.0016216239123
                              EEETTTT.EEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                              y+C+ C+ ksFs   +Lk+H++ +
  mrna16285.1-v1.0-hybrid 216 YSCNRCNkKSFSVVADLKSHLKHC 239
                              99*******************977 PP
3zf-C2H213.40.00023247263521
                              TTTEEESSHHHHHHHHH CS
                  zf-C2H2   5 dCgksFsrksnLkrHir 21 
                               Cg+sFsrks L  H+ 
  mrna16285.1-v1.0-hybrid 247 TCGTSFSRKSKLFGHMA 263
                              6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-6124150No hitNo description
PROSITE profilePS5015712.133127154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-6127149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002127149IPR015880Zinc finger, C2H2-like
PfamPF128745.0E-4128147No hitNo description
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SMARTSM0035528178211IPR015880Zinc finger, C2H2-like
SMARTSM0035513216238IPR015880Zinc finger, C2H2-like
SMARTSM00355230244268IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSFPGQPFHF ATMPEDPDPR VPLQNLDTVR TRMDSLQLFL TQSINNNTLI SQHQMDLVSA  60
GISSAIHEII SNGAALLACS RNQRPGPDLT RVPEVVKKEE ETNNEENGGD SEIVEVDAVE  120
LLAEHVHYCE ICGKGFKRDA NLRMHMRAHG NQFKTPEALA KPEKVATGGG EVVTATRFSC  180
PYGGCNRNKA HAKFRALKSV ICVKNHFKRS HCPKMYSCNR CNKKSFSVVA DLKSHLKHCG  240
EARWRCTCGT SFSRKSKLFG HMALFEGHMP AVEDEKAPGN GAVTAMEEDE GNMMEFNGEG  300
SNPIFDDIDD FSDQLFSGFG SMEGFRLEDM FVDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16285.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465484.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A2P6RQD81e-180A0A2P6RQD8_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004288188.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.34e-77C2H2 family protein