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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15525.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YB | ||||||||
Protein Properties | Length: 383aa MW: 40637.5 Da PI: 10.294 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 185.3 | 4.8e-58 | 191 | 286 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplk+yl mrna15525.1-v1.0-hybrid 191 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYL 276 89************************************************************************************ PP NF-YB 88 kkyrelegek 97 +kyre+egek mrna15525.1-v1.0-hybrid 277 QKYREMEGEK 286 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-54 | 185 | 290 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.43E-40 | 193 | 290 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-27 | 196 | 260 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.0E-21 | 224 | 242 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 227 | 243 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.0E-21 | 243 | 261 | No hit | No description |
PRINTS | PR00615 | 3.0E-21 | 262 | 280 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MNQGVKVRAP PQPGYSSSSQ TRQKPTIRSY LNHIFTVTRV KPNSKGKDGK ASRIISFKWC 60 KTLTRALMQN HLNKLASRQQ NLQKDCYITC KILNRQDLRP HNPSNTPKPA TCTTLIVKQT 120 DHPPPRVAAQ HYYPTDPTDP NKSSPQSLSL FNAAAQLLRR TRKPYQSPMA DSDNDSGGHN 180 GHSQGGELSA REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE FISFVTGEAS 240 DKCQREKRKT INGDDLLWAM TTLGFEEYVE PLKIYLQKYR EMEGEKGAAV GTAGRDKDGG 300 SGGGGSAAGG GGGGGGGSSG GGLSSGTSGG GGAFNGVYGG MGMLGHHQGH VYGSGGYQHQ 360 MGVGVGAEKR SGSGGGASVR SR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-46 | 185 | 281 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15525.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305679.1 | 1e-150 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A2P6S1C4 | 1e-106 | A0A2P6S1C4_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_004305679.1 | 1e-149 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-74 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | mrna15525.1-v1.0-hybrid |