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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15257.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YB | ||||||||
Protein Properties | Length: 248aa MW: 27565.7 Da PI: 4.7323 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 155.8 | 7.5e-49 | 61 | 154 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +e+++++Pianv+rim+++lP akis+dake+vqecvse+isf+t+ea+++cq+e+rkt++++d+lwa+++lGf+dy+epl+++l mrna15257.1-v1.0-hybrid 61 HEHNQYMPIANVIRIMRRILPLYAKISDDAKEIVQECVSEYISFITGEANEHCQQEQRKTVTAEDVLWAMGKLGFDDYIEPLSLFL 146 689*********************************************************************************** PP NF-YB 88 kkyreleg 95 +kyre+eg mrna15257.1-v1.0-hybrid 147 TKYREAEG 154 *****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.8E-45 | 59 | 160 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.43E-35 | 65 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-24 | 66 | 130 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 8.2E-16 | 94 | 112 | No hit | No description |
PRINTS | PR00615 | 8.2E-16 | 113 | 131 | No hit | No description |
PRINTS | PR00615 | 8.2E-16 | 132 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDPMNDLDRV CNNINNHEKS ITASESDPNQ VIDTNNPNEV NISRGNNVEV VSPRQPVQIV 60 HEHNQYMPIA NVIRIMRRIL PLYAKISDDA KEIVQECVSE YISFITGEAN EHCQQEQRKT 120 VTAEDVLWAM GKLGFDDYIE PLSLFLTKYR EAEGINRNSF FMKRERGDGR RKENAMRGHY 180 RPLGLALAEQ QPGVYEPGAM SGSYRDGEEG GSGSGGVGPI SPFLSQGQGE SFVGGGLDPF 240 AQFKLQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-51 | 60 | 151 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15257.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293185.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit B-8-like | ||||
TrEMBL | A0A2P6QFW8 | 1e-77 | A0A2P6QFW8_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_004293185.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF33015 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 4e-53 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | mrna15257.1-v1.0-hybrid |