PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15187.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 1496aa    MW: 166739 Da    PI: 8.5858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15187.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.000213674051255
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              R +++ +++++L++l+ +      +K + a++L +A+ YIk Lq
  mrna15187.1-v1.0-hybrid 367 RKEKLGDRIATLQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 405
                              7778899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.23355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-4365409No hitNo description
SuperFamilySSF474594.45E-10365417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-8369412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5165834.416646787IPR003729Bifunctional nuclease domain
SuperFamilySSF1032564.45E-34646790IPR003729Bifunctional nuclease domain
PfamPF025779.2E-18662782IPR003729Bifunctional nuclease domain
Gene3DG3DSA:1.10.8.209.7E-14927937No hitNo description
SuperFamilySSF469381.96E-179541020IPR011074CRAL/TRIO, N-terminal domain
PfamPF037652.0E-59761003IPR011074CRAL/TRIO, N-terminal domain
Gene3DG3DSA:1.10.8.209.7E-149771005No hitNo description
SMARTSM011001.7E-89791004IPR011074CRAL/TRIO, N-terminal domain
Gene3DG3DSA:3.40.525.106.2E-8510061214IPR001251CRAL-TRIO lipid binding domain
PROSITE profilePS5019126.38810241198IPR001251CRAL-TRIO lipid binding domain
SuperFamilySSF520872.75E-5910241218IPR001251CRAL-TRIO lipid binding domain
SMARTSM005161.1E-5510241195IPR001251CRAL-TRIO lipid binding domain
CDDcd001701.69E-4010251192No hitNo description
PfamPF006504.8E-3310271193IPR001251CRAL-TRIO lipid binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004518Molecular Functionnuclease activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1496 aa     Download sequence    Send to blast
MESANLHHQH HQLQENLSHL GSSSSSSSLA TAPSYYGVGI KHAWTQQPTI TATTTNLSNP  60
SNSSFNSSSS INMVPDLGFH CWPPSSNNLN RAGSSSSIKE ELSSSSSDST FPKFTQMLTS  120
PSSTSINLDD DDHHFSTPTS LGLIKNEQKE MMMNDLSEKL LLKTLSSSGI NHQISLAGDQ  180
HHHQFYSSNN NHVQNFTQLM PGRSGGQYFS QIYPSINISN LNQQSSPSLT ISSCSSLNMN  240
LQAMDLLASS RFSTHEPYNS HDTLGIYNKE IRHNSFGLQQ MHQSRANHHS LLSSGANSKV  300
SIISSPPASS SSSSSLLLTS EQISPFENEI TEVKRPGSLI EPKATQAAAP KKSRLESRTP  360
CPPLKVRKEK LGDRIATLQQ LVAPFGKTDT ASVLMEAIGY IKFLQNQVET LSVPYMKSSR  420
DNKSSQAMLQ AGVVDINGSN GDHERKRDLR SRGLCLVPLS CMSYVTDAAA ATAGVTGSLR  480
LLQLQAFSDP ALFPQIKIRS FRSTYRKLDL ASIIGETPVL IGFVMGTLQG PVICPTVSAK  540
QAGSYNLPMV GPFLKVRHLR SELWGFKAFS GCITKAGFAS RPRNASKCTR VHCTYSSSSN  600
GNGSMAENFN ENDEDYVNSS VLEAVEVKSG ADGFMIKMRD GRHMRCVHNN PQGGHLPDYA  660
PHPAIVLKME DGTGLVLPII LLLPLIAVEM PSVLLMAAVR NVPIARPTMY QVVREMIDKM  720
GYEVQLVRVT KRVHEAYFAQ LYLRKAGSET EFVSFDLRPS DAINIAVRCK VPIQVNKYLA  780
YSDGMRVIES GKLSVHSPAS DGLLFTELDR PNGQPCIETK EFNLVRNMLI AAVEERYRDA  840
ASTQFLSSQQ RRHVRAVGSI RQALSCLSLK FEKLGFRIED WFFRFEGFSS HEERRERKSD  900
FENSEEDRRT RIGSLKKKAI NASSKFRHSL KKKRRKSSSS SRHGSVSIED VRDVEELQAV  960
DAFRQALIME ELLPQKHDDY HMLLRFLVAR KFDIEKAKHM WANMIQWRKD FGTDTILEDF  1020
EFGELDEVRK YYPQCYHGVD KEGRPVYIER LGKVDPNKLL QVTSMERYVR YHVQEFEKSF  1080
AIKFPACSIA AKRHIDSSTT ILDVQGVGFK NFTKSARDLI MRLQKIDNDN YPETLCRMFI  1140
INAGPGFRLL WNTVKTFLDP RTTTKIHVLG NKYQSRLLEV IAASELPEFL GGSCTCSDEG  1200
GCMRSDKGPW KDPNILKMVL SGEAQCFRQI VTVSNGDGRI IASDKPRFTN IRSSDTSTAE  1260
SGSEVEEMGS PKTTRSYLQP KLTPVCEEAR AVGKGSSACG LSEYDEYVPM VDKAVDMGWK  1320
QQVVQQNPLN PGGVSSPQLE EKKPTGVSAY VWTRIMAFLL TLVTLMQSVS FRVTKKLPNS  1380
VSDSTHNTPV LTAEYEEFRP PSPAPGLSRV DLLSSALQKL GELEEKVDML QAKPYEMPHE  1440
KEELLNAAVC RVDALEAELI ATKKALHDAL MRQEELLAYL DRQEQAKLRK KMSCW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1aua_A1e-57979121651288PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P
6f0e_A2e-57983121666299SEC14 cytosolic factor
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1915935KKKAINASSKFRHSLKKKRRK
2930934KKKRR
3930935KKKRRK
4931935KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15187.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5C1G80.0A0A2P5C1G8_PARAD; Cellular retinaldehyde binding/alpha-tocopherol transport
STRINGXP_010110037.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-47bHLH family protein