PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15150.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 103aa    MW: 11558.8 Da    PI: 9.4686
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15150.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-08551246
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                             g+WT    + + +a + + ++   +W+  ar +g g+t++++k ++  
  mrna15150.1-v1.0-hybrid  5 GSWTSRQNKMFENALAVYDKDtpdRWHNMARAVG-GKTAEEVKRHYER 51
                             89********************************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.311257IPR017884SANT domain
SMARTSM007178.4E-8355IPR001005SANT/Myb domain
PfamPF002492.0E-5551IPR001005SANT/Myb domain
CDDcd001671.38E-6653No hitNo description
SuperFamilySSF466897.49E-13660IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-5659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MASSGSWTSR QNKMFENALA VYDKDTPDRW HNMARAVGGK TAEEVKRHYE RLVEDVNRIE  60
SGEVPLPNYT RTSKSGSAGS NKSAYTNSMD IEDQRFKSLK IQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-322102693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15150.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459550.19e-72PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1734e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P6PYP05e-68A0A2P6PYP0_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_008220806.12e-55(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-35RAD-like 6