PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15036.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23829.9 Da PI: 6.3653 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 7 | 55 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + mrna15036.1-v1.0-hybrid 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55 69******9.**********8.....334**********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.36E-36 | 6 | 66 | No hit | No description |
Pfam | PF00847 | 2.5E-11 | 7 | 56 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-41 | 7 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.14 | 7 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-34 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-21 | 7 | 66 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFPYNPNAS QSSASKLLSQ TLTAKLHRCY MASLQMTKST SLKQPSKPQL SFVDTKNVGI 120 VEDEKPSIQV PEKKPAVPEE PKQEQEEEPN WGFVNKVKVE STQDEESIER LEDDHIEQMI 180 EELLHYGSIE LCSVQSVVTP PQTPQASLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-17 | 8 | 71 | 6 | 70 | ATERF1 |
3gcc_A | 1e-17 | 8 | 71 | 6 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15036.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369551 | 5e-87 | KT369551.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291940.1 | 1e-155 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 8e-73 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A2P6PYB0 | 1e-141 | A0A2P6PYB0_ROSCH; Putative transcription factor AP2-EREBP family | ||||
STRING | XP_004291940.1 | 1e-155 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1106 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 4e-54 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna15036.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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