PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15032.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 283aa    MW: 30513.8 Da    PI: 7.3663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15032.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023107129123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C + F ++  L  H++ H
  mrna15032.1-v1.0-hybrid 107 FSCNYCQRKFYSSQALGGHQNAH 129
                              89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-6104134No hitNo description
PROSITE profilePS5015711.427107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEPTRNVVSV ADVPPSPNTP LQDPNESKKK LVILDDQDGE EVEEVNPPNT VLLLDLELSS  60
TSKDSTSNNS GLNPELNLID SLQMGGSSSE TDQSSPGDQG AAEPRVFSCN YCQRKFYSSQ  120
ALGGHQNAHK RERTLAKRGQ RQLMASAAAA AGLGGYPYFH HHQNHPYFSS LASLPLHGAY  180
NNKSLDIQVH SMIHKPSGSG SGIGFGSSYG SRGHRSSRPL FDQQPAIGKL AAQNFQTTTS  240
LRGSGTTVGR FDMTNVAWLE SGSRFRSGQQ EEMKKLDLSL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15032.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291947.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A2P6PYA11e-155A0A2P6PYA1_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004291947.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.18e-40zinc-finger protein 1