![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna14666.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 336aa MW: 37348.3 Da PI: 4.844 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.1e-15 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ +ar g+ R++k+c++rw +yl mrna14666.1-v1.0-hybrid 31 KGLWSPEEDEKLMRYMLNNGQGCWSDVARNAGLERCGKSCRLRWINYL 78 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++ mrna14666.1-v1.0-hybrid 84 RGAFSPQEEDLIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 127 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 25 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.934 | 26 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-27 | 29 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-11 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 31 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.46E-9 | 34 | 78 | No hit | No description |
PROSITE profile | PS51294 | 24.732 | 79 | 133 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 82 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 84 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-10 | 86 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MRKPEPYAVS NTGGKNNKNN SGMSSNNKLR KGLWSPEEDE KLMRYMLNNG QGCWSDVARN 60 AGLERCGKSC RLRWINYLRP DLKRGAFSPQ EEDLIIHFHS LLGNRWSQIA ARLPGRTDNE 120 IKNFWNSTIK KRLKILSSSS STASPNASDS SSEQPNNNDF FAAAGGGGGF MNIIPPSMMP 180 IYPDSSMQAT SLINHMFDPF PMVEHGGYYN NGNPCTAQIG SVGSGSSTGD DCGFGQNIDV 240 FGNVNMRVEE DIYVPPLESV STIDHDQNNL KTETIFYDHN NYYSNTNNII KGENMIGVGN 300 YFEDDHQDQG LTMGEWDLED LMKDVSSFPL LDYQS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 29 | 133 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna14666.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FR828551 | 0.0 | FR828551.1 Rosa rugosa mRNA for putative MYB transcription factor (myb18 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291790.1 | 0.0 | PREDICTED: transcription factor MYB46 | ||||
TrEMBL | F2QKX1 | 0.0 | F2QKX1_ROSRU; Putative MYB transcription factor | ||||
STRING | XP_004291790.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G08500.1 | 1e-70 | myb domain protein 83 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna14666.1-v1.0-hybrid |