PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna14644.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | SRS | ||||||||
Protein Properties | Length: 566aa MW: 60854.8 Da PI: 8.3757 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 202.1 | 1.6e-62 | 107 | 274 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.kskkqsalss 88 + +CqdCGnqakkdC+h+RCRtCCksrgfdCathvks Wvpa +rrerq ++aaa s+a++s+ +++++k++r + +++ + ++ mrna14644.1-v1.0-hybrid 107 ALTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSSWVPAVRRRERQLMAAAAGSSASTSHtTSSNAKKPRLVtSRNTTPSHTN 192 679*********************************************99988877666555537788888887733444556677 PP DUF702 89 tklssaeskkeletss...............lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + +s+++++++ +ts+ +P +v+++avf+cvrv++vdd ge+e+aY+++v+i+GhvfkG+LydqG ++ mrna14644.1-v1.0-hybrid 193 SATSNTTPPRSYDTSHttskhqhhdggfpdtMPGQVQAPAVFKCVRVTAVDDgGEDEYAYHAVVKINGHVFKGFLYDQGRDH 274 78899999999999989999********************************899************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.0E-58 | 108 | 273 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.8E-25 | 109 | 151 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.1E-27 | 224 | 271 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Pfam | PF04827 | 7.3E-11 | 338 | 375 | IPR006912 | Harbinger transposase-derived protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MGMLGLRDVF LVAPAAASYH HHHQDLLSSH HNSLNASNPA TALGVGVMND DSDDHNMMSG 60 RNRNCGGGGV QLWQQPTQQQ QHQLFLKKNQ NLHLMVQAGG GASAASALTC QDCGNQAKKD 120 CSHRRCRTCC KSRGFDCATH VKSSWVPAVR RRERQLMAAA AGSSASTSHT TSSNAKKPRL 180 VTSRNTTPSH TNSATSNTTP PRSYDTSHTT SKHQHHDGGF PDTMPGQVQA PAVFKCVRVT 240 AVDDGGEDEY AYHAVVKING HVFKGFLYDQ GRDHHGFPNI SHLHLGGGSG GGGGGATSST 300 PTGRNEGAPI LDPSDAYAAA AAASTSGGLL LGGSTFFARI AIVRGPARGW NMEDLQYIMT 360 TCIILHNMIV DDEHDEIEDN HEVDPDEVLT RPRRAKIYDH YKVYHLVERD PPALEEFMRQ 420 YQQVRTSLLS PPYVTGEGAP PLQQTLAASP TTFHPQRIRR IPVFREAAGV RWGGGAPSPA 480 PYDGEQREIR TLRRCGRPAD VSPLSTVRLR RRGVSTPVAS SSVPDHFSSP ASPPNSSFPA 540 RSILFEVLGD LAGKLEFGGL AGEGK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna14644.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293145.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 3e-74 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A2P6QF71 | 1e-138 | A0A2P6QF71_ROSCH; Putative transcription factor STY-LRP1 family | ||||
STRING | XP_004293145.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 1e-60 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | mrna14644.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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