PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna14356.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 212aa MW: 22635.4 Da PI: 4.4923

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna14356.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	184	207	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+k F + L++H + H mrna14356.1-v1.0-hybrid 184 FSCGSCSKAFGSDGALQSHNKAkH 207 89*****************88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.655	184	211	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	186	207	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MLFDFETPLK FSYVDKGKYD SSDSEEEEEE LPVIATENGK VENAKPASAK NNAVKPESSG 60 KQKVKIEEPT KDEVDEDESA SDMDDSMDSD DMDDSDDESE DDSDEEDEET PAPKKPESKK 120 RAQVSESAKT PVSAKKAKID TTTPQKTDAK KGGHTDTPHP AKKGKTPATD KSKAQTPKSA 180 GGNFSCGSCS KAFGSDGALQ SHNKAKHSAG K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna14356.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294038.1	3e-97	PREDICTED: histone deacetylase HDT1-like
TrEMBL	A0A2P6QGD0	2e-78	A0A2P6QGD0_ROSCH; Putative histone deacetylase transcription factor C2H2 family
STRING	XP_004294038.1	1e-96	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	3e-16	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	mrna14356.1-v1.0-hybrid