PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13960.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 320aa MW: 35086.4 Da PI: 10.2185 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H mrna13960.1-v1.0-hybrid 43 FVCKTCNREFSSFQALGGHRASH 65 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00096 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H mrna13960.1-v1.0-hybrid 95 HECPICGLEFALGQALGGHMRRH 117 79********************9 PP | |||||||
3 | zf-C2H2 | 13.7 | 0.00018 | 239 | 261 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+ F L H+r+H mrna13960.1-v1.0-hybrid 239 HECPICGMKFAVGQALGGHMRRH 261 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.56E-5 | 38 | 70 | No hit | No description |
Pfam | PF13912 | 5.8E-11 | 42 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.78E-9 | 93 | 117 | No hit | No description |
Pfam | PF13912 | 2.2E-9 | 94 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.933 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.78E-9 | 234 | 261 | No hit | No description |
SMART | SM00355 | 0.03 | 239 | 261 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.5E-8 | 239 | 263 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 239 | 261 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 241 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MKRDRQFEDE QTLDLVSCLM QLSKAGQNDS FPVKKQKTSD RAFVCKTCNR EFSSFQALGG 60 HRASHNKPKL MAGGATDLLQ LSQSTASSPA KPKTHECPIC GLEFALGQAL GGHMRRHRDL 120 MSSAAADRVR AAAVPVLKKS NSSKRVSCLN LDLNLAPPGD QRHYDLTKLQ LIVRLDICQS 180 DQSSKAKSET PPTSLAKEQT LDLDNCLMLL SKVDQNDNFS IKKPVRLAQP SSPARPKKHE 240 CPICGMKFAV GQALGGHMRR HRDVMSSAAE RIRAAAVPVL KKSNSSKRVS SLNLDLNLPP 300 PGYQHHYDLT INVVVNFLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13960.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294604.1 | 1e-114 | PREDICTED: zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2P6QIA5 | 1e-102 | A0A2P6QIA5_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004294604.1 | 1e-113 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 6e-34 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna13960.1-v1.0-hybrid |