PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13960.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 320aa    MW: 35086.4 Da    PI: 10.2185
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13960.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00174365123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C++ Fs+   L  H  +H
  mrna13960.1-v1.0-hybrid 43 FVCKTCNREFSSFQALGGHRASH 65
                             89**********99999998887 PP
2zf-C2H211.50.0009695117123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+Cg  F     L  H+r+H
  mrna13960.1-v1.0-hybrid  95 HECPICGLEFALGQALGGHMRRH 117
                              79********************9 PP
3zf-C2H213.70.00018239261123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+Cg+ F     L  H+r+H
  mrna13960.1-v1.0-hybrid 239 HECPICGMKFAVGQALGGHMRRH 261
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-53870No hitNo description
PfamPF139125.8E-114267IPR007087Zinc finger, C2H2
SMARTSM003550.244365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1384370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-993117No hitNo description
PfamPF139122.2E-994119IPR007087Zinc finger, C2H2
PROSITE profilePS501578.93395122IPR007087Zinc finger, C2H2
SMARTSM003550.1295117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-9234261No hitNo description
SMARTSM003550.03239261IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-8239263IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182239261IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKRDRQFEDE QTLDLVSCLM QLSKAGQNDS FPVKKQKTSD RAFVCKTCNR EFSSFQALGG  60
HRASHNKPKL MAGGATDLLQ LSQSTASSPA KPKTHECPIC GLEFALGQAL GGHMRRHRDL  120
MSSAAADRVR AAAVPVLKKS NSSKRVSCLN LDLNLAPPGD QRHYDLTKLQ LIVRLDICQS  180
DQSSKAKSET PPTSLAKEQT LDLDNCLMLL SKVDQNDNFS IKKPVRLAQP SSPARPKKHE  240
CPICGMKFAV GQALGGHMRR HRDVMSSAAE RIRAAAVPVL KKSNSSKRVS SLNLDLNLPP  300
PGYQHHYDLT INVVVNFLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13960.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294604.11e-114PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A2P6QIA51e-102A0A2P6QIA5_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294604.11e-113(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-34C2H2 family protein