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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13364.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 792aa MW: 88517.8 Da PI: 8.5846 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.2e-12 | 17 | 69 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h Er+RR+++ + ++ Lr+ lP+ + ++K s a+ +Av+YIk Lq mrna13364.1-v1.0-hybrid 17 KKMMHRDTERKRRQEMATLYASLRSTLPPqS---MKGKRSLADHMNEAVNYIKLLQ 69 6899*************************55...*******************998 PP | |||||||
2 | HLH | 22.7 | 1.8e-07 | 243 | 293 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR+ + + + Lr+llP + ++K s +e +Av+YIk+L+ mrna13364.1-v1.0-hybrid 243 IMRRDNERQRRQLMAIRTASLRSLLPLeS---IKGKRSLSEHINEAVNYIKQLK 293 566789*********************66...********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-13 | 15 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-8 | 16 | 73 | No hit | No description |
PROSITE profile | PS50888 | 13.783 | 16 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 17 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.1E-9 | 18 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.042 | 22 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.665 | 240 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.79E-7 | 240 | 297 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-10 | 240 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-4 | 245 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-7 | 245 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.059 | 246 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF56112 | 4.85E-69 | 462 | 741 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:2.60.120.200 | 1.0E-4 | 468 | 492 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF00069 | 1.6E-32 | 480 | 735 | IPR000719 | Protein kinase domain |
PROSITE profile | PS50011 | 26.973 | 480 | 738 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 1.2E-20 | 480 | 738 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 486 | 508 | IPR017441 | Protein kinase, ATP binding site |
CDD | cd14066 | 8.64E-84 | 486 | 740 | No hit | No description |
Gene3D | G3DSA:3.30.200.20 | 9.9E-20 | 493 | 557 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 7.7E-33 | 571 | 763 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MDNDQPCANS IIDNNQKKMM HRDTERKRRQ EMATLYASLR STLPPQSMKG KRSLADHMNE 60 AVNYIKLLQT RIKELGSRRD DLKIQRSSPD LSSTSALGLD GNLSGSTGSS SSLLAGNFST 120 SRAVVNPCLG GVEIVISCVT GVVLSRLLQI LLEQGLTVTN CATTHVNKRL VYTIQSEREF 180 LMSYSVVLSV NLMMKYKSEY QIERTQSLSC RTLTAHKGFS LSNINISEAN VNNKDTDAHE 240 RKIMRRDNER QRRQLMAIRT ASLRSLLPLE SIKGKRSLSE HINEAVNYIK QLKEKIQELN 300 AKREELRRVH QQYYSSSAHD FSPEITGNLG TKSTSNIMVG PTCWGGVEIV VSTSSTNCSE 360 LEGFALSGVL KALLAEGLTI VECASTTVNQ RLFHTIQCEV EDLACQNLPE LQLKLNYLCN 420 SGYNANMKAS KPVPEVRLRR QPPQAPKEEN QPETPRVTKN RDYPWDIYPL KELLHATNNF 480 HHDNKIGEGG FGSVYWGRTS KGVEIAVKRL KTMSPKAEME FAVEVEILGR VRHRNLLGLR 540 GFYAGGDERL IVYDFMPNHS LITHLHGQLA NDCLLDWPRR LSIMIGSADG LSDIKASNVL 600 LDNDFQAKVA DFGFAKLIPE GVSHLTTRVK GTLGYLAPEY AMWGKVSESC DVYSFGILLL 660 EIISGRKPIE KLPGGVKRDI VQWATPYVEK GAYNHIADPR LKGKFDREQV KFTITIAMKC 720 TDNSPENRPT MKQVADWLKG GMGTRKKEIT NVGGMEDDEN EENDGNDTDF EGYGMEVSDN 780 KKDATNAKSQ R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3tl8_A | 4e-62 | 439 | 748 | 1 | 325 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
3tl8_D | 4e-62 | 439 | 748 | 1 | 325 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
3tl8_G | 4e-62 | 439 | 748 | 1 | 325 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
3tl8_H | 4e-62 | 439 | 748 | 1 | 325 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 29 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13364.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7100 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna13364.1-v1.0-hybrid |