PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13234.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 701aa    MW: 77277 Da    PI: 8.8155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13234.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024133154223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              kC +C++ F +  n++rHir+H
  mrna13234.1-v1.0-hybrid 133 KCDKCPREFCSTINYRRHIRVH 154
                              7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.951132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MVAAESGLGI WKDAEKGKCI KKSMDRACES MIAGAYLSHR ADPPPLAPSD FEVKCVVQMP  60
IAKLTDSNTD AMKLDEGNDS LDTIIRQVAK EPSISFSRAG DSPVPWIQLL HALDQQELPG  120
WPLHSPIKVQ MQKCDKCPRE FCSTINYRRH IRVHHRLKKL DKLSTEEAKE SVSFKNVNLE  180
EVAGSSIIKS LTTLIRKPGF TSLPHIYLKA GSVLLDIIQA RPSRFPISSQ ELFSILDDAS  240
EKTFMSGTAT SMQRYIFDGD AGKVKAWHAY KDTEALRLQE LLVEEEEAAQ KRQAELLKRK  300
RQKKLRQKEL KAKDLEKVNG KESIDEPLEE TSSHSTTVDS DSPISDVLDY AHSSAEAFQD  360
SSTNENVDPE SQTVNACGQA DPSNGTNVER RTVQGSGTRR AVARWQVLPK SQWGVPNGVH  420
ASQSSQTSKL PSMQNHGSYR DSRAVSGSNK VWSRKPKPQN DGGSLKAGVQ KDATEPDQIK  480
NHEVLIGSIS VTLGNSCQES NNLAGFRDDG LLEQQMPKNN FQDKTNKPDS VQSSTNRSTV  540
WRLVSRNGTK GPPMPVQNGC RESETDVAAE KRHSRTIHNG TCPNDVIRNG STQAGSLGFS  600
SRAAKDFLAQ RWKEAIAGDH VELVLFEGSE PPRCLDIDSE VAVTHSLRFK RSILGNAENR  660
LVNVEAAEPP VTGAGKVKYR SKKPEKGVKI KYIPKQNTVT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296303LKRKRQKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13234.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470341.10.0PREDICTED: uncharacterized protein LOC101313259
TrEMBLA0A2P6SN640.0A0A2P6SN64_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004308069.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.19e-94C2H2-like zinc finger protein