PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13055.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Nin-like
Protein Properties Length: 321aa    MW: 36942.3 Da    PI: 9.0068
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13055.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.21.1e-25185234352
                   RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              ++i+l dl kyF+ pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl
  mrna13055.1-v1.0-hybrid 185 SKITLPDLVKYFDIPIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 234
                              689*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.713168254IPR003035RWP-RK domain
PfamPF020424.7E-21186234IPR003035RWP-RK domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDSCDPHSLR SLLVFKNTIN QELIRSLHVY GLEDGKENEV EREFLFSDNG SYVELRAYPV  60
LKLMKLNVPQ VLEGYVNGCW HCPKSYRNPQ LKLIPNLAKD LQMVGEMTCI KDEKEPLQKS  120
DEETSQGNDG NYCQLRTSLP MLDLDLNRSP CSVTVSESSD DQESGRQSPG NIEKKNRRAA  180
SERISKITLP DLVKYFDIPI VEASRSLNVG LTVLKKKCRE FGIPRWPHRK IKSLDSLIRD  240
LQSFIVTSVQ EETEFQQKEN KDAALAVAKR QRMLERERES IERKPFLDMK IETKRFRQDV  300
FKRRHRARVL KSQGLSLSGN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13055.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289044.10.0PREDICTED: protein RKD5
TrEMBLA0A2P6RLA90.0A0A2P6RLA9_ROSCH; Putative transcription factor Nin-like family
STRINGXP_004289044.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96463042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.17e-77RWP-RK domain-containing protein