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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12905.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 29586.7 Da PI: 10.6693 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 8.2e-05 | 223 | 250 | 23 | 55 |
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L++llP+ K++ a+iLe A +Y++ Lq mrna12905.1-v1.0-hybrid 223 LQKLLPWE-----NKMDTATILESAHRYVRFLQ 250 899****7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.127 | 200 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0011 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-7 | 215 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-6 | 218 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.30E-4 | 223 | 254 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRIQTQIDDS STHNHDRDPS RTTTLHRSAA PSLPLHFTHS FSARLPRLPP SSATLWDLRS 60 LMPYHLRRRR RYHPVVDIIM YQYRDLRHLV SFHFSAPPRC RRRRTLISHI DLHSILADNT 120 TTQPSLPLSL FADTYCSLAT PKTEPPLYQY GAVSSPNDRP DLLTLDNSPY KRTRLLDSAH 180 QTLEASSAYQ LYPSPPVVAP RGRRLARERR QSGQTLSYKT RCLQKLLPWE NKMDTATILE 240 SAHRYVRFLQ AQVAAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12905.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463010.1 | 3e-81 | PREDICTED: uncharacterized protein LOC105351134 | ||||
TrEMBL | A0A2P6S2I0 | 2e-55 | A0A2P6S2I0_ROSCH; Putative transcription factor bHLH family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13426 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22100.1 | 9e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna12905.1-v1.0-hybrid |