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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12549.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRF | ||||||||
Protein Properties | Length: 397aa MW: 43437.7 Da PI: 7.9323 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.1 | 8.3e-25 | 127 | 171 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ mrna12549.1-v1.0-hybrid 127 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 171 79****************************************986 PP | |||||||
2 | QLQ | 64.3 | 3e-22 | 52 | 88 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk mrna12549.1-v1.0-hybrid 52 SPFTVSQWQELEHQALIFKYMMAGMPVPPDLVLPIQK 88 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.7E-13 | 52 | 88 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.5E-16 | 53 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.576 | 53 | 88 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 127 | 171 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.9E-21 | 128 | 170 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MTLADLIGLP LSFCIVVGVG VVEMNSTGGG GGVGVGGNST GNLMGMGMGM RSPFTVSQWQ 60 ELEHQALIFK YMMAGMPVPP DLVLPIQKSF DSISQRFFHP SKEGLLTVRL WINSAVGYCS 120 FYGKKVDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR GRNRSRKPVE SQTMTQSSST 180 VTSLIVSGTS SGTVSFQTLP LNSFGNTQGA SSGTNQSHYQ IDSIPFGIPN KDYRYLPGLK 240 PDMGEHSFLS DTSGSNRGLH MDSPLDGTWP VMPSRVTSFP TSTSGDGSVL QNDYRQNSFF 300 NNDFPSGEPL KHEGQPLRPF FDEWPKGRDA WSGLEDERSN QTSFSTTQLS ISIPMTSSDF 360 SATSSQSPHG ESRMQGMFNK SPFPFLISVV KSFTDN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12549.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235264 | 1e-70 | AC235264.1 Glycine max strain Williams 82 clone GM_WBb0041H18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307837.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
TrEMBL | A0A2P6SQ10 | 0.0 | A0A2P6SQ10_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family | ||||
STRING | XP_004307837.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-44 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna12549.1-v1.0-hybrid |