PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12200.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 367aa    MW: 40111.6 Da    PI: 6.4227
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12200.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-064061325
                             S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                             ++ C+f+a  G C  G+rC++ H
  mrna12200.1-v1.0-hybrid 40 ERVCKFWAD-GKCVKGERCPYLH 61
                             689******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.16125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.915126IPR000571Zinc finger, CCCH-type
PfamPF146080.017624No hitNo description
PROSITE profilePS5010313.2353764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-73862IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-43963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-44161IPR000571Zinc finger, CCCH-type
PfamPF146080.00394361No hitNo description
SMARTSM003207.1E-557101IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.7E-1569171IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509787.05E-4369356IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.75369110IPR001680WD40 repeat
PfamPF004001.6E-569101IPR001680WD40 repeat
PROSITE profilePS5029421.67469322IPR017986WD40-repeat-containing domain
PROSITE patternPS00678088102IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-688102IPR020472G-protein beta WD-40 repeat
SMARTSM0032017141178IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.105.9E-30172355IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.5E-4189226IPR001680WD40 repeat
PfamPF004000.015195226IPR001680WD40 repeat
PROSITE profilePS5008211.745196235IPR001680WD40 repeat
PROSITE patternPS006780213227IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-6213227IPR020472G-protein beta WD-40 repeat
SMARTSM003206.7E-4229266IPR001680WD40 repeat
PfamPF004000.02231266IPR001680WD40 repeat
PROSITE profilePS500829.071236275IPR001680WD40 repeat
PRINTSPR003201.4E-6253267IPR020472G-protein beta WD-40 repeat
SMARTSM003207272313IPR001680WD40 repeat
SMARTSM00320240316353IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSQTVCKFWA MSRCMNKRCP YLHPAQKSPP VISQEKAKAE RVCKFWADGK CVKGERCPYL  60
HAWFRGDGFQ GHKKGITGIA LTDNSSCLYS AAKDGTVRVW DCNTGQCSKV INLGAEAGCL  120
ISKGVWVFCG ASNLVKAWNT ECNTEFTLAG PVGQVHAMEV ENDMVFAGTE EGVIYVWKGI  180
VCSDTKANPF HPHQALSGHT GAVVSLRVGS IRLYTGSVDY TIRVWNLDTL ECAMTLNGHS  240
DTVTSLITWS TCLISCSLDH TIKAWSMSEG GKIEEIYTHT EEDGLLALSG MHDGEDQPLL  300
FCSSKDNSVR MYDLPSFDER GKLFAKREVQ AIQIGSGGLF FTGDETGGLS VWKWLEPADK  360
QESSSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-224831610323Tako8
6g6n_A5e-224831610323Tako8
6g6n_B5e-224831610323Tako8
6g6n_C5e-224831610323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12200.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301390.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-128C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2P6QT980.0A0A2P6QT98_ROSCH; Putative transcription factor C3H family
STRINGXP_004301390.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF231645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-131zinc finger WD40 repeat protein 1