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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12119.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26061.4 Da PI: 4.6218 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.3 | 1.7e-27 | 8 | 57 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien rqvtfskRr+g++KKA ELSvLCdaevavi+fsst+klye+s+ mrna12119.1-v1.0-hybrid 8 KIENLPARQVTFSKRRKGLFKKAGELSVLCDAEVAVILFSSTDKLYEFST 57 79**********************************************96 PP | |||||||
2 | K-box | 46.2 | 1.9e-16 | 79 | 169 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +++ ++ + + e +L+ e+ + +++Rh+ G+dLe+L++ eLq+Le+ +e +l+++ ++K++ +++qi l k el e+n+ mrna12119.1-v1.0-hybrid 79 QQSPNELQLVTDECMRLNMELAEKNHKLRHMEGQDLEELKIDELQRLENMIEGGLSRVLQTKDQRIMSQILALETKGAELTEANNL 164 4566778888999999999999999************************************************************* PP K-box 94 Lrkkl 98 Lr++l mrna12119.1-v1.0-hybrid 165 LRQRL 169 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.5E-31 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.361 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-27 | 2 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.81E-34 | 3 | 73 | No hit | No description |
Pfam | PF00319 | 8.6E-25 | 8 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.2E-14 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.047 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MNKIRIEKIE NLPARQVTFS KRRKGLFKKA GELSVLCDAE VAVILFSSTD KLYEFSTSST 60 VDVIARFKLC TEDVEEGDQQ SPNELQLVTD ECMRLNMELA EKNHKLRHME GQDLEELKID 120 ELQRLENMIE GGLSRVLQTK DQRIMSQILA LETKGAELTE ANNLLRQRLG TLSNGDGNKA 180 SGVLSDPGIS TDEEDMRSGS CTIATSCFST GSSSSSMDDS SSEYTLSLKL GLLPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-15 | 3 | 67 | 5 | 69 | MEF2C |
5f28_B | 7e-15 | 3 | 67 | 5 | 69 | MEF2C |
5f28_C | 7e-15 | 3 | 67 | 5 | 69 | MEF2C |
5f28_D | 7e-15 | 3 | 67 | 5 | 69 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12119.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299729.1 | 1e-170 | PREDICTED: MADS-box protein AGL24 | ||||
Refseq | XP_011464654.1 | 1e-170 | PREDICTED: MADS-box protein AGL24 | ||||
Refseq | XP_011464655.1 | 1e-170 | PREDICTED: MADS-box protein AGL24 | ||||
Refseq | XP_011464656.1 | 1e-170 | PREDICTED: MADS-box protein AGL24 | ||||
TrEMBL | A0A2P6PH10 | 1e-115 | A0A2P6PH10_ROSCH; Putative transcription factor MADS-MIKC family | ||||
STRING | XP_004299729.1 | 1e-170 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 4e-53 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna12119.1-v1.0-hybrid |