PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11117.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 440aa    MW: 47901.8 Da    PI: 9.5573
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11117.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033199221223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +Cp Cg  F   +nL+ H+ + H
  mrna11117.1-v1.0-hybrid 199 SCPECGAIFMKAENLELHQAVrH 221
                              8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808198226IPR007087Zinc finger, C2H2
SuperFamilySSF563997.1E-21223437No hitNo description
Gene3DG3DSA:3.90.228.106.1E-13224436IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAKPKSQRKP TKPTHQKIKK QNQNQNQNPQ NKPEIKPPYW AVVRGLLTCK HLQAVQLLQQ  60
EGKHHPQKQQ SEQLAAMEES KKCKKMRCSG SLCSNTKITH RPELGSPEIH KKRASSMGCS  120
SSSTNETSSR SMKAPLHELN GVVSTSSSSL SASSNISSAG GSFRAMPFRR FSGCYECRMV  180
VDPVLGFTRD PSLRGSICSC PECGAIFMKA ENLELHQAVR HAVSELGPED TSKNIVEIIF  240
QSSWLKKQAP ICKIDRILKV HNTQKTISKF EEYRDSIKAK ATKLQLPNKK HPRCIADGNE  300
LLRFHCTTFD CSLGLNGSSN LCNSIPSCNV CSIIKNGFKV DRSELAGSSE ILTTATSGRA  360
HDMAEVAAED GRRAMLVCRV IAGRVKKNAD GQGGGGGGGG VEEYDSVAGA VGVYSNLDEL  420
YVFNPKAILP CFVVIYGGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11117.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290833.10.0PREDICTED: uncharacterized protein LOC101294815
TrEMBLA0A2P6PX120.0A0A2P6PX12_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004290833.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-104C2H2-like zinc finger protein