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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10994.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TALE | ||||||||
Protein Properties | Length: 185aa MW: 20981.4 Da PI: 5.7343 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.6 | 2.1e-08 | 122 | 155 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + mrna10994.1-v1.0-hybrid 122 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 155 469*****************************87 PP | |||||||
2 | ELK | 30.3 | 9.3e-11 | 76 | 97 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ mrna10994.1-v1.0-hybrid 76 ELKHELKQGYKEKIVDIREEIL 97 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 3.3E-7 | 76 | 97 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 76 | 96 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 76 | 97 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 96 | 159 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-16 | 98 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-11 | 98 | 163 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.69E-12 | 99 | 160 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 103 | 160 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.4E-18 | 116 | 155 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEAVMACWEI EQSLQSLTGV SPGEGTGATM SDDDEEQVDS DANLFDGSMD GHDSMGFGPL 60 IPTESERSLM ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT SVLKAWWQSH 120 SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSTSTVLKSK RKSNAGENSS 180 DRFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-13 | 99 | 163 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10994.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ413778 | 0.0 | HQ413778.1 Fragaria vesca knotted-like homeobox KNOX5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458838.1 | 1e-133 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 1e-118 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | F6H3V2 | 1e-125 | F6H3V2_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g06130.t01 | 1e-126 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-120 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna10994.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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