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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10828.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 407aa MW: 46172.2 Da PI: 6.6255 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.2 | 3.9e-15 | 22 | 96 | 16 | 97 |
EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l lp f+ ++ +++++ + +++gr+W+v + +k +++++ GW++Fv++ngLk g+++vF++ g+s+f +v +f mrna10828.1-v1.0-hybrid 22 LKLPSAFL-QClngRLPPQC----S-LQTQGRTWNVSV--EKVNHKFYFQLGWNGFVQDNGLKCGEILVFHYAGNSQF--HVEIF 96 77788887.45454444444....3.3469********..999999****************************9*99..99988 PP | |||||||
2 | B3 | 51.1 | 2.4e-16 | 312 | 402 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ ++ + + l +p++fa+eh ++++ + ++l+ + r W+vk+ + + ++ l++GW++Fv++n+Lk g ++vF l++ mrna10828.1-v1.0-hybrid 312 SMSISYASGKFLNVPRSFAAEHltNLQP-G--HIILK-VNKRFWSVKV--NYLGTTTKLQAGWSKFVHDNNLKFGYVCVFVLTNAI 391 45556666677***********865554.3..35544.588*******..55555577************************999* PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 efe+vv +fr mrna10828.1-v1.0-hybrid 392 EFEYVVEIFRV 402 *********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.76 | 1 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-20 | 6 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-21 | 6 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-13 | 7 | 96 | No hit | No description |
SMART | SM01019 | 1.1E-7 | 9 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-12 | 22 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-19 | 302 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 302 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-17 | 307 | 401 | No hit | No description |
PROSITE profile | PS50863 | 11.899 | 308 | 403 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-12 | 309 | 403 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-14 | 310 | 402 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MATKINPSFI KALQGDQFSV KLKLPSAFLQ CLNGRLPPQC SLQTQGRTWN VSVEKVNHKF 60 YFQLGWNGFV QDNGLKCGEI LVFHYAGNSQ FHVEIFGINT CKKLHVMPEM EEANEHDVSP 120 EILDDLPPCP RKAEEKSFLS SPLPHKRSKA SSSGKADITL NFLKRLPRLE KSAMKKKDSH 180 RSESKMISIF DNDSGDEDHH DEKEYEDDDH DEECDAENED DEEEATEDQE KEEDDDSIET 240 LSDSPGCSRT VRKYTLASSL HQRKRKRYTV KAKTKIKAVG VLSSEEKILK AIAIQRACTF 300 KFNSDNPCFV ISMSISYASG KFLNVPRSFA AEHLTNLQPG HIILKVNKRF WSVKVNYLGT 360 TTKLQAGWSK FVHDNNLKFG YVCVFVLTNA IEFEYVVEIF RVTDAV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10828.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465809.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A2P6RMW0 | 1e-174 | A0A2P6RMW0_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004301742.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26254 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 6e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna10828.1-v1.0-hybrid |